Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq334 93.3 4e-14 seq2815 87.8 2e-12 seq333 87.8 2e-12 seq1879 82.4 7e-11 >seq334 Length=798041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||| | ||| | |||||||||||||| || ||||| || | Sbjct 402005 CCCCCGCGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGAC 402064 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| || ||| | || | ||||||||| || || || Sbjct 402065 AGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGG 402124 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGAC 127065 ||||||||||| ||| || ||| || | | |||| || || | | || || || Sbjct 402125 ATGCCCTCCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCT-TCCAC 402183 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| |||||||| || || || || || || ||||| Sbjct 402184 TTCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 ||| || ||| |||| | ||||||||||| || || ||||| ||||||||| |||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| | | || | |||||| | ||| ||||||| || | || |||||||| Sbjct 402887 AGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGT 402946 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || |||||||| Sbjct 402947 CAACGTTTTCACGAAGATCTGCAT 402970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| | || | ||||||||||| || || || |||||||||||| |||||| Sbjct 405842 TTACCAGCGAAAATGAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGTATTTTC 405901 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | |||| ||||||| | ||| ||||| | || | ||||| || ||| Sbjct 405902 GCCTTAACGTTCTCGATTGTGTCCGAAGCCTCCACTTCAAGTGTGATGGTTTTACCAGTC 405961 Query 127091 AGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||||||||||| Sbjct 405962 AACGTCTTAACGAAAATCTGCATG 405985 >seq2815 Length=71442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 59719 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 59660 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| |||||||| ||||||||| | || | |||||| ||||| || || || | Sbjct 59659 TTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 59600 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 59599 CGAATATCTGCAT 59587 >seq333 Length=310902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 44583 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 44524 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| |||||||| ||||||||| | || | |||||| ||||| || || || | Sbjct 44523 TTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 44464 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 44463 CGAATATCTGCAT 44451 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 43323 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 43264 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| ||| |||| ||||||||| | || | |||||| ||||| || || || | Sbjct 43263 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43204 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 43203 CGAATATCTGCAT 43191 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 43575 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 43516 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| ||| |||| ||||||||| | || | |||||| ||||| || || || | Sbjct 43515 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43456 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 43455 CGAATATCTGCAT 43443 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 43827 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 43768 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| ||| |||| ||||||||| | || | |||||| ||||| || || || | Sbjct 43767 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43708 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 43707 CGAATATCTGCAT 43695 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 44079 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 44020 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| ||| |||| ||||||||| | || | |||||| ||||| || || || | Sbjct 44019 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43960 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 43959 CGAATATCTGCAT 43947 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | || ||||||||||| ||||| || ||||||||| || ||| |||| | Sbjct 44331 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 44272 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| ||| |||| ||||||||| | || | |||||| ||||| || || || | Sbjct 44271 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 44212 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 44211 CGAATATCTGCAT 44199 >seq1879 Length=657420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||| || ||||| |||||||| |||||||| |||||| ||||| ||| | | Sbjct 526482 AGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGTATTTTAGCCTTCACAT 526541 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||| | || |||| ||| || |||| ||| | ||| || || || || ||||| | Sbjct 526542 TTTCAATCGTATCCGAGGCCTCCACCTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTGA 526601 Query 127101 CAAAAATCTGCAT 127113 | ||||||||||| Sbjct 526602 CGAAAATCTGCAT 526614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475364943477680