Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2815 95.1 1e-14 seq334 84.2 2e-11 >seq2815 Length=71442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| || |||||||| || || || ||||| || || ||||| || | Sbjct 58222 CCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGCT 58163 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | |||||| || | |||||||| || || | ||||||||| ||||| Sbjct 58162 TTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAGG 58103 Query 45321 GTTTTTACAAAAATTTGCATCG 45342 || || || ||||||||||||| Sbjct 58102 GTCTTGACGAAAATTTGCATCG 58081 >seq334 Length=798041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| |||||| | || | || ||||| || ||||| |||||||| || || || ||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || | || | || | ||||||||| | ||| ||||||||||| | || ||||||| Sbjct 402887 AGCCTTAA-CGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGG 402945 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | ||||| || || || ||||| Sbjct 402946 TCAACGTTTTCACGAAGATCTGCAT 402970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451874057035720