Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq334 127 5e-24 seq333 93.3 1e-13 seq2815 87.8 4e-12 >seq334 Length=798041 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || || || ||||| ||||||| ||||||||| | || ||| Sbjct 402011 CGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTA 402070 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||| || || ||||| || || ||||||||||| || || || Sbjct 402071 CGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCC 402130 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||| |||| || || | || ||| || |||| | Sbjct 402131 TCCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGC 402190 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || || || || ||||| Sbjct 402191 GTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTG 402228 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| ||||||||||| || ||| |||||||| ||||| ||||| | Sbjct 405228 CCAGCGAAGATTAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC 405287 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| ||||| | | || || |||| ||||||||||||||||||||| Sbjct 405288 TTCACATTCTCGATCGTGTCAGAGGCCTCCACCTCCAGCGTGATCGTCTTACCCGTGAGG 405347 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||| || || Sbjct 405348 GTCTTGACAAAGATCTG 405364 >seq333 Length=310902 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| |||||||| ||||||||||||||||| || || || || || |||||||| Sbjct 45046 CTTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTT 44987 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| ||||| || |||| | || || |||||||| |||||||| || || Sbjct 44986 CGCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGT 44927 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || || Sbjct 44926 GAGTGTCTTGACAAAGATCTG 44906 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| ||||||||||| ||||| || || || || || ||||| Sbjct 40205 CTTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTT 40146 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| |||| |||||||| | ||| || || | ||||||||||| || || Sbjct 40145 GGTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGT 40086 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || Sbjct 40085 TAGTGTTTTTACGAAAATCTG 40065 >seq2815 Length=71442 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| |||||||| || |||||||||||||| || || || || ||||||||||| Sbjct 60179 CTTACCGGCGAAAATTAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATCTT 60120 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| ||||| || || | | || || |||||||| |||||||| || || Sbjct 60119 CGCCTTCACGTTTTCGATTGTATCCGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGT 60060 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || || Sbjct 60059 GAGTGTCTTGACAAAGATCTG 60039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178576346546419