Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1344 150 7e-31 seq15426 96.9 1e-14 seq1894 91.5 6e-13 seq422 91.5 6e-13 seq3710 86.0 2e-11 seq3068 86.0 2e-11 seq2562 86.0 2e-11 seq2202 86.0 2e-11 seq1398 86.0 2e-11 >seq1344 Length=202344 Score = 150 bits (166), Expect = 7e-31 Identities = 220/308 (71%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 |||||||| | | |||||| |||| || |||| |||| ||||| |||||||| ||| Sbjct 95613 TTCAAGTAGAATTTAAAGGCGAAAAACGAATTTTTACTCCCGAAGAGATTTCATCAATGA 95672 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 || | || |||||||| || || ||| | | |||| ||| || | ||||| | Sbjct 95673 TTTTGGTGAAGATGAAAGAGACTGCTGAAGCTTTTGTTGGCCATCCGGTAAGAGATGCCG 95732 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-A 451384 | | || || || || ||||||||||| ||||| ||||| || |||||||| || | Sbjct 95733 TTGTAACCGTACCGGCATATTTCAATGACAGTCAACGACAAGCGACCAAAGATGCGGGCA 95792 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || |||||||| | ||||| | || || |||||||| ||||| || ||||| || || Sbjct 95793 CA-ATTGCTGGGCTCAATGTGTTACGTATCATTAATGAGCCTACTGCTGCTGCACTTGCC 95851 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| || | || ||| || ||| || |||||| | | ||||||||||| || Sbjct 95852 TATGGTCTTGATAA---GAAATTAAGAGAGGATAAAAATGTGCTCGTATTTGATTTAGGC 95908 Query 451505 GGAGGAAC 451512 || || || Sbjct 95909 GGTGGCAC 95916 >seq15426 Length=395 Score = 96.9 bits (106), Expect = 1e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| || || || || ||||| ||| || ||||| || || || || |||| || Sbjct 157 CCTGAGGAGATCTCTTCGATGGTACTTGTGAAGATGAAGGAGACTGCCGAGGCATATCTT 216 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || || |||||||| ||||| |||||||| || ||||||||||| || || || Sbjct 217 GGCCACCCTGTTACTGAGGCAGTTATTACTGTGCCGGCTTATTTCAACGACAGTCAGCGT 276 Query 451364 CAAGCAACTAAAGATGCAGGACAT-ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 || |||||||||||||| || | | || || || | || || ||||| ||||| || Sbjct 277 CAGGCAACTAAAGATGC-GGCCGTGATCGCAGGCCTCAAACCACTGCGAATCATTAACGA 335 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || || || | || ||||| || Sbjct 336 GCCAACTGCTGCAGCGTTGGCCTATGGTCT 365 >seq1894 Length=693 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| ||| |||||| ||| ||||||| |||| |||||||||||||| Sbjct 515 GCCTTCTTAGCTCAGTCGGA--AGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 572 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 573 GTCCCACAAAAGGC 586 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| ||| |||||| ||| ||||||| |||| |||||||||||||| Sbjct 515 GCCTTCTTAGCTCAGTCGGA--AGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 572 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 573 GTCCCACAAAAGGC 586 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| ||| |||||| ||| ||||||| |||| |||||||||||||| Sbjct 515 GCCTTCTTAGCTCAGTCGGA--AGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 572 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 573 GTCCCACAAAAGGC 586 >seq422 Length=72688 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 4694 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 4637 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 4636 GTCCCACAGAAGGC 4623 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 || || |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 221 GCGTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 164 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 163 GTCCCACAGAAGGC 150 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 4694 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 4637 Query 511715 ATCCCACATAAGGC 511728 ||||||| ||||| Sbjct 4636 GTCCCACAGAAGGC 4623 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 4694 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 4637 Query 510801 ATCCCACATAAGGC 510814 ||||||| ||||| Sbjct 4636 GTCCCACAGAAGGC 4623 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||| |||||||||||| || ||||||| ||| ||||||| ||| |||||||||||||| Sbjct 11871 GCCGTATTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATGTGAGGGTCGTGGGTTCGA 11814 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 11813 GTCCCACAGAAGGC 11800 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 |||||||||| ||||| || | ||||| ||| ||||||| |||| |||||||||||||| Sbjct 15265 GCCTTATTAGGTCAGTCGG--TGGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 15208 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 15207 GTCCCACAAAAGGC 15194 >seq3710 Length=1259 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 89 GCCTTCGTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 146 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 147 GTCCCACAGAAGGC 160 >seq3068 Length=643 Score = 86.0 bits (94), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 509509 TTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGAGTC 509568 || |||||||||| || ||||||| ||| ||||||| |||| ||||||||||||||||| Sbjct 170 TTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTC 113 Query 509569 CCACATAAGGC 509579 ||||| ||||| Sbjct 112 CCACAAAAGGC 102 >seq2562 Length=3331 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 404 GCCTTCGTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 347 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 346 GTCCCACAAAAGGC 333 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 || || |||||||||| || ||||||| ||| ||||| |||||| |||||||||||||| Sbjct 1496 GCGTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTGACCTGAGGGTCGTGGGTTCGA 1439 Query 509566 GTCCCACATAAGGC 509579 |||||||| ||||| Sbjct 1438 GTCCCACAAAAGGC 1425 >seq2202 Length=155475 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 89764 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 89821 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 89822 GTCCCACAGAGGGC 89835 >seq1398 Length=268368 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| |||||||||| || ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 140417 GCCTTCTTAGCTCAGTCGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 140360 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 140359 GTCCCACAGAGGGC 140346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975139800370556