Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1344 298 4e-75 seq2524 122 7e-22 seq15426 89.7 4e-12 >seq1344 Length=202344 Score = 298 bits (330), Expect = 4e-75 Identities = 829/1252 (66%), Gaps = 37/1252 (3%) Strand=Plus/Minus Query 517475 GTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGA 517534 ||||| | ||| || | |||||||| | |||||| || ||||| | |||||| || || Sbjct 96561 GTGTTACGATCGATTAAGTTGGTCATCACACCACCGGCCGTTTCAATACCAAGTGATAGT 96502 Query 517535 GGAGTGACATCAAC---TAGGACAATATTTTGAAGTTTT-TCATCAGTTTGACCAACAAG 517590 || | ||||| || ||||||| | ||| |||||| || | || || | ||| Sbjct 96501 GGTGCAACATCGACCAATAGGACA-TCCTTTACAGTTTTGTCTT--GTACTCCCGA-AAG 96446 Query 517591 AATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATT 517650 ||| || ||||||| ||| || ||||| || || |||||||| || || | | | ||| Sbjct 96445 AATTGCCGCTTGAACAGCCGCTCCATAGGCGACTGCTTCATCGGGGTTGATCGAATGATT 96386 Query 517651 TAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGA 517710 |||| ||||||||| ||||| | | | | || | || || |||||||||| ||| Sbjct 96385 CAGTTCTTTACCATTAAAAAATTCGGCTAACATTTTTTGCACTTTTGGAATACGAGTTGA 96326 Query 517711 TCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAAC 517770 || ||||| | | || |||| | || ||| |||| | || |||| | | Sbjct 96325 ACCGCCAACAAGAATAACCTCATCAATTTGACGTTTCTCCAAATGTGCATCCGTAATCGC 96266 Query 517771 TTTTTCAACGGGTTCAAGACCCGCTCTA---AACAAGTCTGAACAAAGTTCTTCGAATTT 517827 ||| || || |||||||| || | || || | ||| || | || || || Sbjct 96265 TTTCTCTACTGGTTCAAG---CGTTTTACGAAAAAGGTCAATGCATAACTCCTCAAAACG 96209 Query 517828 AGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGT 517887 || | | || | ||| ||| ||||| || | ||| ||| ||||| || Sbjct 96208 TGCACGTGAAATTTTCGAATTCATATCCATTCCCTCATATAAACTATCGACTTCGATTAC 96149 Query 517888 AGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCG 517947 | | ||| ||| |||| | |||||||||||||||||| || || | || | || Sbjct 96148 CGCCTCAGTTGAACTCGATAAAGTACGTTTAGCACGTTCACAAGCCGTACGAAGCCGTCT 96089 Query 517948 TAAGGCTTTTG--CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 518005 || | | | | || ||||| | |||| | ||| | ||||| ||||| ||| Sbjct 96088 CAACGATCTAGGGCTTCTTGAT--ATATCTTTACCGGTTTTACGTTTGAATTCTTCGACA 96031 Query 518006 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 518065 | || | || | |||| || ||||| || || ||||| | |||| || | ||| Sbjct 96030 AAAAATTTCACCATGCGATCGTCGAAATCCTCTCCACCCAAATGCGTATCACCGGCCGTT 95971 Query 518066 GCTCTTACTTGGAA--AAGT-CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCA 518122 | | | || | ||| ||| || || | | ||||||| | ||||| || ||| Sbjct 95970 GATTTGACCTCGAATAAAGAGCCTTCAGCGATTGACAAAATTGAAACATCGAATGTGCCA 95911 Query 518123 CCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATA 518181 || || | |||||| | || ||||| | || | |||| ||| |||||||||||||| Sbjct 95910 CCGCCTAAATCAAATACGAGCACATTTTTATCCTC-TCTTAATTTCTTATCAAGACCATA 95852 Query 518182 CGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCT 518241 |||| ||||||||||| || |||||||| || | || ||||| || ||||||||| | Sbjct 95851 GGCAAGTGCAGCAGCAGTAGGCTCATTAATGATACGTAACACATTGAGCCCAGCAATTGT 95792 Query 518242 TCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 518301 || |||||||| || ||||||| ||| || || |||||||| || || || | ||| Sbjct 95791 GCCCGCATCTTTGGTCGCTTGTCGTTGACTGTCATTGAAATATGCCGGTACGGTTACAAC 95732 Query 518302 GGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAAT 518361 |||||| |||| | |||| | |||| || || | |||||| || ||||| Sbjct 95731 GGCATCTCTTACCGGATGGCCAACAAAAGCTTCAGCAGTCTCTTTCATCTTCACCAAAAT 95672 Query 518362 CATTGATGAAATTTGTTCTGGGG--AATATTGCTTGGATTCATTTTGATATGATACTTCA 518419 |||||||||||| | ||| || | || ||| || ||| || | || ||||| | Sbjct 95671 CATTGATGAAATCTCTTCGGGAGTAAAAATTCGTT--TTTCGCCTTTAAATTCTACTTGA 95614 Query 518420 AAATATGGTTTATTACCAACATT---AATAACTTTAAATGGCCAGTATTTCATATCTGAT 518476 | ||| ||||| || | || || || ||||| | | ||||||| | Sbjct 95613 ACGGCCGGT---TTACCGTTTTTTGCTACAATCTTGAACGGCCAATGTCGCATATCTTCT 95557 Query 518477 TGAACACTTT--GGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTAT 518534 || |||||| | || | | | | ||||| | |||||||| ||||| | |||| Sbjct 95556 TG--CACTTTCGGATCGTCCATTTTCCGTCCAATAAGGCGTTTTGCGTCAAATACCGTAT 95499 Query 518535 TGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTG 518594 | ||||| | || |||||| | || | || || || || | || || || | Sbjct 95498 TTTCAGGATTTCTGGCCACTTGATCATATGCCGGATTGCCGATTAGCCGCTCGGTATCGG 95439 Query 518595 TAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTT 518654 | |||| |||||||| || ||||| ||| |||||||| || ||||||||||| |||| Sbjct 95438 TGAATGCCACATATGAAGGTGTTGTCTTATTGCCTTGATCGTTGGCAATAATTTCCACTT 95379 Query 518655 TACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 518706 | |||| ||| |||| || |||||||| | || || |||| ||||| || Sbjct 95378 TGCCATATTGAAATACGCCAACACAACTGTACGTCGTGCCTAGGTCAATTCC 95327 >seq2524 Length=117457 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||| || || | ||||||||| || |||||||| ||||| | | ||| Sbjct 93326 TTTTTGTCCAAACCGTATGCGATAGCAGCAGCGGTCGGTTCATTGATAATACGAAGCACA 93267 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||||||| || |||||||| |||||||| | ||| || |||||||| ||| Sbjct 93266 TTCAGACCAGCAATTGCACCCGCATCTTTGGTGGCTTGACGTTGCGAGTCGTTAAAGTAT 93207 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||||| ||| |||| Sbjct 93206 GCTGGTACAGTAACAACCGCAT 93185 >seq15426 Length=395 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| ||||||||||| || || || ||||||||||| || ||||| |||| || Sbjct 374 TTTTTGTCAAGACCATAGGCCAACGCTGCAGCAGTTGGCTCGTTAATGATTCGCAGTGGT 315 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || || || | ||||||||||| || || | || ||||| ||||| Sbjct 314 TTGAGGCCTGCGATCACGGCCGCATCTTTAGTTGCCTGACGCTGACTGTCGTTGAAATAA 255 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||||||||| || ||||| || Sbjct 254 GCCGGCACAGTAATAACTGCCTCAGTAAC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779688160369042