Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq334 149 1e-30 seq333 118 2e-21 seq1879 98.7 2e-15 seq2815 87.8 4e-12 >seq334 Length=798041 Score = 149 bits (164), Expect = 1e-30 Identities = 118/142 (83%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 404255 TACCAGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCCTCTTTGTCTTGGATTTTCG 404314 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||||||||| ||||| || ||||| ||||| |||| |||||| || || | Sbjct 404315 CCTTGACGTTCTCAATTGTGTCTGATGCCTCCACCTCAAGAGTAATCGTCTTGCCAGTTA 404374 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 404375 ACGTCTTGACGAAGATCTGCAT 404396 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||||||||| || ||||| || | ||||| | ||||| || Sbjct 402023 ACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCA 402082 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| |||||||| || |||||||| || ||||| || || || ||| Sbjct 402083 AGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGA 402142 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || ||||| || || || || ||||||||| || || | |||||| Sbjct 402143 ATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTCTTG 402202 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 402203 CCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||||||||| || || || || ||||| || |||||||| ||||| || ||||| Sbjct 402828 TTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTTA 402887 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||||||||| || |||||||| || || | ||||| || ||| Sbjct 402888 GCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGTC 402947 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 402948 AACGTTTTCACGAAGATCTGCAT 402970 Score = 116 bits (128), Expect = 8e-21 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| ||||| ||||| || || |||||||| || || ||||| || ||||||||||| Sbjct 407798 TGCTTGCCTGCAAAGATGAGACGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATC 407857 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||| ||||| || ||||| |||||||| || || | |||||| || Sbjct 407858 TTAGCCTTGACGTTTTCAATCGTATCCGATGCCTCCACTTCGAGAGTGATCGTCTTGCCA 407917 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT--TTATG 195145 || | ||| || ||||| | |||||| ||||| Sbjct 407918 GTGAGAGTCTTCACGAAGATTTGCATGATTATG 407950 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||||||||| ||||| || || || |||||||| |||||||| || || Sbjct 404765 CTTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTT 404824 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || |||||||| || || ||||| ||||||||||| || | ||||||||| || Sbjct 404825 CGCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGT 404884 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | |||||| Sbjct 404885 GAGGGTCTTGACAAAGATCTGCATT 404909 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || || || || || ||||| ||||| || || ||||| || ||||| Sbjct 405842 TTACCAGCGAAAATGAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGTATTTTC 405901 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| |||||||| || ||||||||| ||||||||||| || | || || || ||| Sbjct 405902 GCCTTAACGTTCTCGATTGTGTCCGAAGCCTCCACTTCAAGTGTGATGGTTTTACCAGTC 405961 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 405962 AACGTCTTAACGAAAATCTGCAT 405984 >seq333 Length=310902 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || || || || || || ||||| || |||||||| || || Sbjct 40205 CTTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTT 40146 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || |||||||| |||||||| || |||||||||||| || | |||||||||||| Sbjct 40145 GGTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGT 40086 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||||||||| | |||||| Sbjct 40085 TAGTGTTTTTACGAAAATCTGCATT 40061 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| ||||| || ||||| || || || || || ||||| ||||| ||||| || Sbjct 44592 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 44533 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||| || ||||||||||| || ||||| || || | ||| || || || | Sbjct 44532 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 44473 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 44472 GTGTCTTCACGAATATCTGCAT 44451 >seq1879 Length=657420 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || ||||| | ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 526471 CTAACCGGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGTATTTT 526530 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| || ||||| ||||| || ||||| | |||||| || || Sbjct 526531 AGCCTTCACATTTTCAATCGTATCCGAGGCCTCCACCTCGAGGGTTATCGTCTTACCCGT 526590 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 526591 TAGGGTTTTGACGAAAATCTGCAT 526614 >seq2815 Length=71442 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| ||||| || || || || ||||| || || || ||||| ||||| ||||| || Sbjct 58223 ACCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGC 58164 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||||| || ||||||||||| ||| ||||| || || | ||| || || || | Sbjct 58163 TTTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAG 58104 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || ||||| | |||||| Sbjct 58103 GGTCTTGACGAAAATTTGCAT 58083 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| ||||| || ||||| || || || || || ||||| ||||| ||||| || Sbjct 59728 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 59669 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||| || ||||||||||| || ||||| || || | ||| || || || | Sbjct 59668 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59609 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 59608 GTGTCTTCACGAATATCTGCATT 59586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109156682419319