Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq8483 87.8 1e-12 seq2815 87.8 1e-12 >seq8483 Length=232 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 |||||||| || |||||||||||||| | || | |||||||||||| ||||||| Sbjct 3 CCGGCAAAAATGAGTCGTTGCTGGTCGGGTGGTATCCCCTCCTTGTCTTGAATCTTCGCC 62 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 ||||| | | || | || ||| || || || | || || ||||| || ||||| Sbjct 63 TTGACATTTTCGATAGTATCGGAGGCTTCGACTTCAAGTGTGATCGTTTTACCAGTGAGG 122 Query 34962 GTCTTCACAAAGATCTGCATA 34982 |||||||| || ||||||||| Sbjct 123 GTCTTCACGAAAATCTGCATA 143 >seq2815 Length=71442 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 |||||||| || |||||||||||||| | || | |||||||||||| ||||||| Sbjct 58638 CCGGCAAAAATGAGTCGTTGCTGGTCGGGTGGTATCCCCTCCTTGTCTTGAATCTTCGCC 58579 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 ||||| | | || | || ||| || || || | || || ||||| || ||||| Sbjct 58578 TTGACATTTTCGATAGTATCGGAGGCTTCGACTTCAAGTGTGATCGTTTTACCAGTGAGG 58519 Query 34962 GTCTTCACAAAGATCTGCATA 34982 |||||||| || ||||||||| Sbjct 58518 GTCTTCACGAAAATCTGCATA 58498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324543166919496