Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1344 228 7e-54 seq2524 131 1e-24 seq334 118 9e-21 seq15426 87.8 1e-11 >seq1344 Length=202344 Score = 228 bits (252), Expect = 7e-54 Identities = 406/587 (69%), Gaps = 24/587 (4%) Strand=Plus/Plus Query 550008 TAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCA 550067 |||| || || || ||||||||||| || | ||| |||| ||||| ||||||||||||| Sbjct 95337 TAGGCACGACGTACAGTTGTGTTGGCGTATTTCAATATGGCAAAGTGGAAATTATTGCCA 95396 Query 550068 ATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAG 550127 | |||||||| || | || || || || ||||| | ||||| || || || | || Sbjct 95397 ACGATCAAGGCAATAAGACAACACCTTCATATGTGGCATTCACCGATACCGAGCGGCTAA 95456 Query 550128 TTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTA 550187 | || || | ||| | |||||| | | |||||| ||||| | ||||| || | Sbjct 95457 TCGGCAATCCGGCATATGATCAAGTGGCCAGAAATCCTGAAAATACGGTATTTGACGCAA 95516 Query 550188 AACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGC 550247 |||| | |||||| | | | | ||| ||| || || | ||||||| ||||||| Sbjct 95517 AACGCCTTATTGGACGGAAAATGGACGATCCGAAAGTGCAAGAAGATATGCGACATTGGC 95576 Query 550248 CTTTCCAAATTGTT--AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATC 550305 | ||| | ||||| || ||||| || | | || ||| | || || Sbjct 95577 CGTTCAAGATTGTAGCAA---------AAAACGGTAAACCG--GCCGTTCAAGTAGAATT 95625 Query 550306 T------GTTAAAC-AATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 | | |||| |||||| || | ||| | |||||||| ||| |||| |||| || Sbjct 95626 TAAAGGCGAAAAACGAATTTTTACTCCCGAAGAGATTTCATCAATGATTTTGGTGAAGAT 95685 Query 550357 GAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACC 550416 |||| | || || ||||||||||| || || | ||||| || |||| ||||| Sbjct 95686 GAAAGAGACTGCTGAAGCTTTTGTTGGCCATCCGGTAAGAGATGCCGTTGTAACCGTACC 95745 Query 550417 AGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACT 550476 |||||||| |||||| ||||| ||||| || |||||||| || |||||||| || Sbjct 95746 GGCATATTTCAATGACAGTCAACGACAAGCGACCAAAGATGCGGGCACAATTGCTGGGCT 95805 Query 550477 TAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| | ||||| || ||||| |||||||||||||||||||| ||||| |||||||| Sbjct 95806 CAATGTGTTACGTATCATTAATGAGCCTACTGCTGCTGCACTTGCCTATGGTCTTGATAA 95865 Query 550537 -ACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 | || | || | || ||||| ||| | ||||||| || ||| Sbjct 95866 GAAATTAAGA-GAGGATAAAAATGTGCTCGTATTTGATTTAGGCGGT 95911 Score = 116 bits (128), Expect = 3e-20 Identities = 274/412 (67%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 || ||||| ||| |||| ||||||||| ||| ||| || ||||| | || Sbjct 96152 ATCGAAGTCGATAGTTTATATGAGGGAATGGATATGAATTCGAAAATTTCACGTGCACGT 96211 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 ||||| || | || ||| || ||| | ||||| ||||||||||||| ||| | Sbjct 96212 TTTGAGGAGTTATGCATTGACCTTTTTCGTAAAACGCTTGAACCAGTAGAGAAAGCGATT 96271 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 | ||| || | | || ||| || | |||| || | |||||||| || || || Sbjct 96272 ACGGATGCACATTTGGAGAAACGTCAAATTGATGAGGTTATTCTTGTTGGCGGTTCAACT 96331 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 | ||||| ||| | | |||||||| | ||| ||||||||| || | ||| | Sbjct 96332 CGTATTCCAAAAGTGCAAAAAATGTTAGCCGAATTTTTTAATGGTAAAGAACTGAATCAT 96391 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 | || || ||||| || || |||||||| || || ||||||| || |||||||| Sbjct 96392 TCGATCAACCCCGATGAAGCAGTCGCCTATGGAGCGGCTGTTCAAGCGGCAATTCTTTCG 96451 Query 552264 GGACAAACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 ||| | || |||||| ||| || | || | || |||||| | || ||||| | Sbjct 96452 GGAGTACAAGA--CAAAACTGTAAAGGATGTCCTATTGGTCGATGTTGCACCACTATCAC 96509 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATAC 552373 ||||| | ||||| | || ||| | ||||| || | |||||| | || || Sbjct 96510 TTGGTATTGAAACGGCCGGTGGTGTGATGACCAACTTAATCGATCGTAACAC 96561 >seq2524 Length=117457 Score = 131 bits (144), Expect = 1e-24 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||||||||| ||||| ||||| ||||||||||| || ||||||| Sbjct 93185 ATGCGGTTGTTACTGTACCAGCATACTTTAACGACTCGCAACGTCAAGCCACCAAAGATG 93244 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || |||||||| || ||||| |||||||||||||||||||| || |||||||| Sbjct 93245 CGGGTGCAATTGCTGGTCTGAATGTGCTTCGTATTATCAATGAACCGACCGCTGCTGCTA 93304 Query 550518 TTGCATATGG 550527 | ||||| || Sbjct 93305 TCGCATACGG 93314 >seq334 Length=798041 Score = 118 bits (130), Expect = 9e-21 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||||||||| ||| | ||||| || ||||| || | ||||| | Sbjct 402014 AGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGG--ATGTTGTAGTCCGACAGAGTAC 402071 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| ||||| ||||| || || |||||||||| ||||| || || || || || | Sbjct 402072 GTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCT 402131 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | ||||| ||||| || ||| || ||| || ||||| | || | || ||| || Sbjct 402132 CCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATC-GGATGCTTCCACTTCCAGC 402190 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || ||||| || |||||||| ||||||||| Sbjct 402191 GTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCATA 402232 >seq15426 Length=395 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 550315 ATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGT 550372 |||||||| | || | || || || ||||| | |||| ||||| | || ||| Sbjct 148 ATTTTCACACCTGAGGAGATCTCTTCGATGGTACTTGTGAAGATGAAGGAGACTGCCGAG 207 Query 550373 GCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 || | | |||| || ||||| || ||||| || ||||| || || ||||| || ||| Sbjct 208 GCATATCTTGGCCACCCTGTTACTGAGGCAGTTATTACTGTGCCGGCTTATTTCAACGAC 267 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGT-ATTGCTGGACTTAATGTTCTTCGTAT 550491 || ||||| || ||||||||||| || ||| || || || || || || || || Sbjct 268 AGTCAGCGTCAGGCAACTAAAGATGC-GGCCGTGATCGCAGGCCTCAAACCACTGCGAAT 326 Query 550492 TATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || || || || |||||||| || | || ||||| ||||| ||| Sbjct 327 CATTAACGAGCCAACTGCTGCAGCGTTGGCCTATGGTCTTGACAAA 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028087218754930