Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq334 111 1e-19 seq2815 107 2e-18 seq333 107 2e-18 seq1429 95.1 1e-14 >seq334 Length=798041 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| |||||||| || ||||| || | | ||| | |||| || | || Sbjct 402028 ATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCAAGCTG 402087 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || || || || | ||||| || || || || ||||| || ||||| ||||| || Sbjct 402088 TTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGAATCTT 402147 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||| || || | ||||||||| || |||| ||| |||||||| Sbjct 402148 CGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTCTTGCCGGT 402207 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || || ||||| Sbjct 402208 AAGCGTCTTAACGAAGATTTGCAT 402231 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 404765 CTTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTT 404824 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | || || || | |||||||||||||| | ||| || ||||| Sbjct 404825 CGCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGT 404884 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 404885 GAGGGTCTTGACAAAGATCTGCAT 404908 >seq2815 Length=71442 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||| || |||||||| || || |||||||| |||||||| || Sbjct 59292 TACCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCG 59233 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| |||| || ||||| || |||| |||||| ||||| | Sbjct 59232 CTTTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59173 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 59172 GTGTCTTCACGAATATCTGCAT 59151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 59728 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 59669 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| || |||| | ||||| |||| || ||||| || |||| |||||| ||||| | Sbjct 59668 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59609 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 59608 GTGTCTTCACGAATATCTGCAT 59587 >seq333 Length=310902 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || || | |||||| ||||| || || ||||| || || ||||| || || Sbjct 40205 CTTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTT 40146 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | ||||| |||| ||||||||||||||||| ||| || || || Sbjct 40145 GGTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGT 40086 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| || |||||||| Sbjct 40085 TAGTGTTTTTACGAAAATCTGCAT 40062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 44592 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 44533 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| || |||| | ||||| |||| || ||||| || |||| |||||| ||||| | Sbjct 44532 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 44473 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 44472 GTGTCTTCACGAATATCTGCAT 44451 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 43331 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43272 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| || |||| | || || |||| || ||||| || |||| |||||| ||||| | Sbjct 43271 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43212 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 43211 TGTCTTCACGAATATCTGCAT 43191 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 43583 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43524 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| || |||| | || || |||| || ||||| || |||| |||||| ||||| | Sbjct 43523 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43464 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 43463 TGTCTTCACGAATATCTGCAT 43443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 43835 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43776 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| || |||| | || || |||| || ||||| || |||| |||||| ||||| | Sbjct 43775 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43716 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 43715 TGTCTTCACGAATATCTGCAT 43695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 44087 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 44028 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| || |||| | || || |||| || ||||| || |||| |||||| ||||| | Sbjct 44027 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43968 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 43967 TGTCTTCACGAATATCTGCAT 43947 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || || |||||||| || || ||||| || || ||||| || Sbjct 44339 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 44280 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| || |||| | || || |||| || ||||| || |||| |||||| ||||| | Sbjct 44279 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 44220 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 44219 TGTCTTCACGAATATCTGCAT 44199 >seq1429 Length=437943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| || || || | ||||||||||||||| || || || || || || |||||||| Sbjct 418753 CTAACCGGCGAAAATTAGACGCTGTTGATCGGGTGGGATACCCTCCTTGTCCTGAATTTT 418694 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||| |||| | ||| || |||| || || ||||| |||| || ||||| || Sbjct 418693 GGCCTTTACGTTTTCGATAGTATCCGACGCCTCAACCTCAAGTGTGATGGTCTTGCCCGT 418634 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||| || ||||| ||||||||| Sbjct 418633 CAGAGTCTTCACAAAAATCTGCATG 418609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396168008849949