Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_020877.1 Length=131332 Score E Sequences producing significant alignments: (Bits) Value seq3162 401 5e-107 seq616 159 3e-34 >seq3162 Length=12458 Score = 401 bits (444), Expect = 5e-107 Identities = 813/1200 (68%), Gaps = 37/1200 (3%) Strand=Plus/Minus Query 125317 TTTGTATGATACTCCAAAGGCTTAAATTCCCATACAACGAATGGTACACATATTTAGTAT 125376 || |||| | |||| | ||| ||||||| |||||||| || |||| || | ||| Sbjct 6180 TTGGTATAACTCTCCGAGGGCGTAAATTCGGATACAACGCATCCTACATATCAGCATTAT 6121 Query 125377 CTTATTTGTGATAACTTA----AATATTATAGTTAGCTAAATTAATACTAGCATTAAGGT 125432 ||| || |||||| ||| ||| ||||| || | | ||||||||| || || | | Sbjct 6120 CTTCTTAGTGATA--TTATGCTAAT-TTATATTTTGAAAGATTAATACTTGCGTTTAAAT 6064 Query 125433 CTCTATCAATACTAAAACCACATTTACATTTAAATACTCTGTCTGATAGTTTTAGGTTTT 125492 ||||||||||| ||| ||||| |||||||| | ||||| ||| ||||||| | || Sbjct 6063 CTCTATCAATATTAAGTCCACAGCTACATTTATAAACTCTATCTTTAAGTTTTAAATCTT 6004 Query 125493 TATGGATACTACCACATGTAGAACATGTTTTACTAGAAGGGAAAAATCTATCTACAATAA 125552 | | | | |||||| | ||| || || || || ||||||||||| | | | Sbjct 6003 TTTTAACCTTTCCACATTGACTACAAGTCTTTGATGATGGATAAAATCTATCTGCTACTA 5944 Query 125553 CAAGTTCAATTCCTTGTCTTTCACATTTGTATTCTAATTGCCTTCTAAACTCATAAAATC 125612 | | ||||||||| || ||| || |||| | ||| ||| |||| |||||||| | Sbjct 5943 CTAACTCAATTCCTCTAAATTTACACTTATATTGAAGTTGTCTTTTAAATTCATAAAAAC 5884 Query 125613 CTTGTTTTTGTATTGCTTTAGCTAAATGTCTATTCTTCATCATCCCTTTTACATTCAAAT 125672 |||||||| ||| || | || ||||||| |||| |||||||| ||||| ||||| |||| Sbjct 5883 CTTGTTTTCTTATGGCATCAGATAAATGTTTATTTTTCATCATTCCTTTAACATTTAAAT 5824 Query 125673 CTTCAATAACAATTCTTCTAGGTTTGGTTTTCACGATAGAAGATGTTACTTGATGTAAAT 125732 |||| || |||| ||| || ||||||||||| ||| | ||| || ||| | || Sbjct 5823 CTTCTATTACAACTCTGTATGGCTTGGTTTTCACTATACTTGTTGTACTTTCATGAAGAT 5764 Query 125733 AGTTTTTACGAATATTAGACAATCTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTA 125792 |||| || | ||| |||| |||||||| || | ||| || ||||| ||||||| Sbjct 5763 AGTTATTTCTAATGTTAGCCAATCTTCTATGGATTTGTTGTATACACTTTTCAAGTTTTA 5704 Query 125793 TGATATTGCAAGTTTTGACAAACGTACTCCCTTCTTTAtttttttGGTATTTGAAAGATA 125852 | ||||| |||||||||| || | |||| ||||||||||| ||||| | | Sbjct 5703 TTATATTTTTAGTTTTGACATACTCCTTTCCTTTTTTATTTTTTTCATATTTTCTACTCA 5644 Query 125853 CCTTACGTTGCAACCTACGTAATCGTTTTTCTAATTTTTTAACCTTTAT-TGTTTTATTA 125911 | | | ||| | || ||||| ||||| |||||| | || || ||||||| Sbjct 5643 CTTGTCTTTGTAGTCTTTTTAATCTCTTTTC-AATTTTCCTAACTACATAACTTTTATTT 5585 Query 125912 ATATTACCATAAATA--GTACCATCTGAACATACAGCTAACTCTTTTATCCCTAAATCAA 125969 ||||| | |||||| |||||||| || |||| ||||| ||| | ||||| || | Sbjct 5584 ATATTTC--TAAATACTGTACCATCAGAGCATATTGCTAAAATTTTCAATCCTAAGTCTA 5527 Query 125970 TACCTAAGGACTCGTTGGTCAAATCTTCATATTTATTTTCTTCTTCTATAGAGATACTTA 126029 | ||||| || | | || |||||||| | | | ||||| ||||||| | | Sbjct 5526 TTCCTAATGATACATCTGTTAAATCTTCTTTAATTTGTTCTTTTTCTATACCTACCGAGA 5467 Query 126030 TATACCAGTATTTACCATCAAAAGTAATTCTAGGATTGTAGTACTTAGTGTCTATAGGTA 126089 ||||||| || || |||| | | || | |||||| |||||| | ||||||| Sbjct 5466 TATACCAATACTTGTTATCATATGATATACGAGGATTACTATACTTAACTCCAATAGGTA 5407 Query 126090 GTTGTTCAGAAGTTCTAACCCAACCTACCTTTTC--TATT-AGTACTTTTTTCTCTTTTA 126146 |||||||| |||| | | |||||| |||||||| |||| | || | | || ||||| | Sbjct 5406 GTTGTTCATTAGTTTTTATCCAACCAACCTTTTCAATATTAACTAATCTATTTTCTTTAA 5347 Query 126147 CTACTA---GTGCATACGTGTCATTATAGAAACTAGGTCTTGTTTTCTTTTTAGATTTGA 126203 || || | ||| | ||||||||||| | | || | ||||||| | | Sbjct 5346 CTTTTAACTTTACAT---TATCATTATAGAA---GGATTTTTTACTCTTTTT---TCTAC 5296 Query 126204 ACTTA------GGGAAACCAGATTTCNNNNNNNNNNNNNNNNNATATGCATTGCATGCGT 126257 |||| || | | ||| ||| ||||| || || | Sbjct 5295 TCTTAAGTCGTGGTTTATCTGATAATCCATTGAAGAATCTTTTATAAGCATTACAAGCAT 5236 Query 126258 CTTTAACTGCTTGTTTAGGAACATTGTTACTTACTTCATGTAACCAACTAAACTCTTTAG 126317 |||| || |||||||||| |||||| ||| |||||||| ||||||| | || || | Sbjct 5235 CTTTTACAGCTTGTTTAGCAACATTATTAGATACTTCATTTAACCAATTTAA---TTCAT 5179 Query 126318 TTTTCTTTAGTTGTGTAATTTCTTTTCTTAATACTGTGTCTTGTATAAATTTTTTACCTT 126377 |||||||||| | || | ||| ||||| || | | || | |||||||||| ||| | Sbjct 5178 TTTTCTTTAGCTTGGTTAATTCCTTTCTCAAAATTCCATCATATATAAATTTTCCACCAT 5119 Query 126378 GTTCGTAATTTTCTTGCTGTTTTGCTATAGTCCAATTATATATAAATCGTGCTATACCAG 126437 ||| |||||||||| ||||||| | ||||||||||||||||| | ||| | ||| Sbjct 5118 TTTCATAATTTTCTTCTTGTTTTGAAAGTGTCCAATTATATATAAACCTTGCAGTTCCAA 5059 Query 126438 CTGATTTACATAATTTTAATTTTTGTTGCTTGGTAGGTTTAAGTCTGACTTTTTTCGTTA 126497 |||| | || | |||| | |||| | | || | | ||| |||||||||| || Sbjct 5058 CTGACTGCCAAAGTTTTTTCTCTTGTATTTCACTTGGATACAATCTAACTTTTTTCGATA 4999 >seq616 Length=43856 Score = 159 bits (176), Expect = 3e-34 Identities = 289/421 (69%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 125399 TTATAGTTAGCTAAATTAATACTAGCATTAAGGTCTCTATCAATACTAAAACCACATTT- 125457 ||||| || |||||||||||||| ||||| ||||||| ||| ||| | ||| || Sbjct 37855 TTATAATTTGCTAAATTAATACTTGCATTTTTATCTCTATGAATTATAAGATTACACTTT 37796 Query 125458 --------ACATTTAAATACTCTGTCTGATAGTTTTAGGTTTTTATGGATACTACCACAT 125509 |||| || | || ||| |||| ||| | || | |||| | ||| Sbjct 37795 GGATTGGTACATATATAGGTCCTATCTTTTAGTCTTAAATCCTTTTTGATAGTTTTACAA 37736 Query 125510 GTAGAACATGTTTTACTAGAAGGGAAAAATCTATCTACAATAACAAGTTCAATTCCTTGT 125569 |||||| ||||||| || ||||||||||| | |||||| ||||||||| | Sbjct 37735 CAAGAACAAAGTTTACTACTTGGATAAAATCTATCTGCTTTAACAAATTCAATTCCATTC 37676 Query 125570 CTTTCACATTTGTATTCTA--ATTGCCTTCTAAACTCATAAAATCCTTGTTTTTGTATTG 125627 | | | |||| ||||| | || || | |||| | || ||| | ||||| | || | Sbjct 37675 CACTTAAATTTATATTCAAGTATAGC--TATAAATTTATTAAAACATTGTTCTGAAATCG 37618 Query 125628 CTTTAGCTAAATGTCTATTCTTCATCATCCCTTTTACATTCAAATCTTCAATAACAATTC 125687 |||||| ||||||| |||| || ||||| ||||||||||| |||||||||| || | || Sbjct 37617 CTTTAGATAAATGTTTATTTTTTATCATTCCTTTTACATTTAAATCTTCAACTACTACTC 37558 Query 125688 TTCTAGGTTTGGTTTTCACGATAGAAGATGTTACTTGATGTAAATAGTTTTTACGAATAT 125747 | | ||| || |||||||| || | | | |||||||| | ||| | ||||| Sbjct 37557 TACAAGGCTTAGTTTTCACTATTGTATTAATAGTTTGATGTATGTGATTTAATCTAATAT 37498 Query 125748 TAGACAATCTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTATGATATTGCAAGTTT 125807 | |||| || ||| | | ||| || |||||||| | |||||||||||| ||||| Sbjct 37497 CTG-CAATTTTTTTTGAACAATTTTTATCTGTTTTTCAATTTTTATGATATTTTGAGTTT 37439 Query 125808 T 125808 | Sbjct 37438 T 37438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420020562400061