Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq334 89.7 1e-12 seq2815 86.0 1e-11 seq333 84.2 4e-11 >seq334 Length=798041 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||| ||||| | || |||||||||||| ||||| ||||| || |||||||| || Sbjct 404766 TTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTTC 404825 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| || || || | ||| || | || ||||| ||||| || || || || || Sbjct 404826 GCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGTG 404885 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || || | ||| ||||||||| Sbjct 404886 AGGGTCTTGACAAAGATCTGCATT 404909 >seq2815 Length=71442 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || | | || ||||| ||||||||||||||||| ||||| || || Sbjct 59292 TACCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCG 59233 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| || | || |||| || ||||| || || || |||||||| || | Sbjct 59232 CTTTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59173 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||| || | ||||||||||| Sbjct 59172 GTGTCTTCACGAATATCTGCAT 59151 >seq333 Length=310902 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | | || ||||| |||||||||||||| || || || || || | Sbjct 43331 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43272 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || || | ||| |||| || ||||| || || || |||||||| || | Sbjct 43271 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43212 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||| || | ||||||||||| Sbjct 43211 TGTCTTCACGAATATCTGCAT 43191 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | | || ||||| |||||||||||||| || || || || || | Sbjct 43583 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43524 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || || | ||| |||| || ||||| || || || |||||||| || | Sbjct 43523 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43464 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||| || | ||||||||||| Sbjct 43463 TGTCTTCACGAATATCTGCAT 43443 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | | || ||||| |||||||||||||| || || || || || | Sbjct 43835 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43776 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || || | ||| |||| || ||||| || || || |||||||| || | Sbjct 43775 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43716 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||| || | ||||||||||| Sbjct 43715 TGTCTTCACGAATATCTGCAT 43695 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | | || ||||| |||||||||||||| || || || || || | Sbjct 44087 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 44028 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || || | ||| |||| || ||||| || || || |||||||| || | Sbjct 44027 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43968 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||| || | ||||||||||| Sbjct 43967 TGTCTTCACGAATATCTGCAT 43947 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | | || ||||| |||||||||||||| || || || || || | Sbjct 44339 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 44280 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| || || || | ||| |||| || ||||| || || || |||||||| || | Sbjct 44279 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 44220 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||| || | ||||||||||| Sbjct 44219 TGTCTTCACGAATATCTGCAT 44199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984191689801950