Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2815 95.1 2e-14 seq8483 89.7 9e-13 seq333 84.2 4e-11 >seq2815 Length=71442 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | || || || ||||||||||||||||| ||||| || || Sbjct 59292 TACCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCG 59233 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || || |||| || ||||| || || || |||||||| || | Sbjct 59232 CTTTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59173 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||| || | |||||||||||| Sbjct 59172 GTGTCTTCACGAATATCTGCAT 59151 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | || || ||||| |||||||| || || || ||||| || || Sbjct 58640 TACCGGCAAAAATGAGTCGTTGCTGGTCGGGTGGTATCCCCTCCTTGTCTTGAATCTTCG 58581 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| |||||||| || | ||| ||||| || || || ||||||||||| | Sbjct 58580 CCTTGACATTTTCGATAGTATCGGAGGCTTCGACTTCAAGTGTGATCGTTTTACCAGTGA 58521 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| Sbjct 58520 GGGTCTTCACGAAAATCTGCAT 58499 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 |||||| ||||| | | ||| ||||| |||||||||||||| || || || || || Sbjct 58223 ACCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGC 58164 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || || || |||| ||| ||||| || || || ||||| ||||||| Sbjct 58163 TTTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAG 58104 Query 172049 TGTTTTAATGAATATCTGCAT 172069 || || | ||| || ||||| Sbjct 58103 GGTCTTGACGAAAATTTGCAT 58083 >seq8483 Length=232 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | || || ||||| |||||||| || || || ||||| || || Sbjct 1 TACCGGCAAAAATGAGTCGTTGCTGGTCGGGTGGTATCCCCTCCTTGTCTTGAATCTTCG 60 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| |||||||| || | ||| ||||| || || || ||||||||||| | Sbjct 61 CCTTGACATTTTCGATAGTATCGGAGGCTTCGACTTCAAGTGTGATCGTTTTACCAGTGA 120 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| Sbjct 121 GGGTCTTCACGAAAATCTGCAT 142 >seq333 Length=310902 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| || | | || || || |||||||||||||| || || || || || | Sbjct 43331 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43272 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || ||||| |||| || ||||| || || || |||||||| || | Sbjct 43271 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43212 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||| || | |||||||||||| Sbjct 43211 TGTCTTCACGAATATCTGCAT 43191 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| || | | || || || |||||||||||||| || || || || || | Sbjct 43583 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43524 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || ||||| |||| || ||||| || || || |||||||| || | Sbjct 43523 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43464 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||| || | |||||||||||| Sbjct 43463 TGTCTTCACGAATATCTGCAT 43443 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| || | | || || || |||||||||||||| || || || || || | Sbjct 43835 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 43776 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || ||||| |||| || ||||| || || || |||||||| || | Sbjct 43775 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43716 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||| || | |||||||||||| Sbjct 43715 TGTCTTCACGAATATCTGCAT 43695 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| || | | || || || |||||||||||||| || || || || || | Sbjct 44087 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 44028 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || ||||| |||| || ||||| || || || |||||||| || | Sbjct 44027 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 43968 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||| || | |||||||||||| Sbjct 43967 TGTCTTCACGAATATCTGCAT 43947 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| || | | || || || |||||||||||||| || || || || || | Sbjct 44339 ACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGT 44280 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || ||||| |||| || ||||| || || || |||||||| || | Sbjct 44279 TTTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAG 44220 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||| || | |||||||||||| Sbjct 44219 TGTCTTCACGAATATCTGCAT 44199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904877391330600