Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1219 109 7e-18 seq22425 104 3e-16 seq2642 104 3e-16 seq17198 95.1 1e-13 >seq1219 Length=419765 Score = 109 bits (120), Expect = 7e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||| ||| | | ||| ||||| |||| || ||||||||||| | ||| || Sbjct 315860 GCAAGTTCCCCGGGTAGGATGAGGCGAACGGATGTTTGGATCTCGCGAGACGAGATTGTC 315919 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 || ||||| | ||||||||||||| || || | |||| || |||| | |||| Sbjct 315920 GATCGTTTGTTGTATTGCGCCAGACGGCTAGCTTCCGCAGCGATCCGCTCGAAAACGTCG 315979 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||| | |||||||| || || |||||| ||| || |||||| Sbjct 315980 TTTACAAACGAGTTCATAATCGACATCGCTTTCGACGAAATGCCCGTGTCTGGATGCACC 316039 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| | || ||| || ||| | ||| ||||| Sbjct 316040 TGCCTAAGTACCCGATAAATGTAAACCGAATACGA 316074 >seq22425 Length=2500 Score = 104 bits (114), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | ||| || || ||||| ||||| || || || | | || Sbjct 1537 GCTTGGCCAGCTCTCCCGGAAGGATAAGACGGACGGCTGTCTGAATTTCCCGAGAGGAGA 1596 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | ||| |||| ||||||| || || | || || | | || | |||| | Sbjct 1597 TGGTGGTACGCCTGTTGTAGTGCGCAAGCCGACTCGCTTCCGCTGCAATTCTTTCGAAGA 1656 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||| | |||||| | ||| || ||||| ||| || | Sbjct 1657 CGTCGTTCACGAACGAGTTCATAATCGACATAGCCTTAGATGAAATGCCAGTGTCCGGAT 1716 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | |||||||||||||| ||||||| || ||| ||||| Sbjct 1717 GAACCTGCTTGAGCACGCGGTAGATGTACACCGAATACGA 1756 >seq2642 Length=345336 Score = 104 bits (114), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| || ||| | | || || |||||||| ||||| || ||||| | ||| || Sbjct 171116 GCCAACTCTCCGGGAAGAATGAGACGCACGGCTGTCTGAATTTCGCGAGAAGAGATGGTC 171175 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | |||||||| ||||||| || || | || || | | || || |||| | |||| Sbjct 171176 GTACGCTTGTTGTAGTGCGCAAGTCGACTCGCTTCCGCTGCAATCCGCTCGAAAACGTCG 171235 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| ||||||| || || |||||| || || || ||| Sbjct 171236 TTCACAAACGAGTTCATGATTGACATCGCTTTCGACGAAATGCCCGTATCCGGATGTACC 171295 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||||||| |||||| || |||||||| Sbjct 171296 TGCTTGAGCACACGATAGATGTACACAGAGTACGA 171330 Score = 86.0 bits (94), Expect = 8e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| || || || ||||| || ||||| ||||| | |||||| Sbjct 177430 GCAAGCTCTCCGGGCAGAATGAGCCGAACGGCTGTTTGGATTTCGCGAGACGAGATCGTC 177371 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 || || || | ||||| ||||||| || || | | || || |||| | |||| Sbjct 177370 GATCGTTTATTGTATTGCGCTAGACGGCTAGCTTCTGCAGCAATCCGCTCGAAAACGTCG 177311 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| ||||||| || || |||||| || || || ||| Sbjct 177310 TTCACGAACGAGTTCATGATTGACATCGCTTTCGACGAAATGCCCGTATCCGGATGTACC 177251 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||| ||||| || ||| || |||||||| Sbjct 177250 TGCTTCAGCACACGATAAATGTACACAGAGTACGA 177216 >seq17198 Length=501 Score = 95.1 bits (104), Expect = 1e-13 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 || ||||| |||| ||||| | ||||| | ||| || || || || | ||| Sbjct 171 ATGAGGCGGACGGACGTCTGCACTTCGCGAGACGAGATGGTTGAACGTTTATTGTAATGC 230 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 || || |||| |||||||| | | ||||| |||| | ||| || || ||||| |||||| Sbjct 231 GCAAGTCGGCTGGCCTCGGCGGCAATGCGTTCGAAGACGTCATTCACGAACGAATTCATG 290 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAG 1254545 | |||||||| ||| ||| || || ||| || || |||||||||||||| |||| Sbjct 291 ATCGACATCGCCTTCGAGGAAATACCGGTGTCAGGATGGACCTGCTTGAGCACACGGTAG 350 Query 1254546 AT 1254547 || Sbjct 351 AT 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105263447540669