Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2815 118 1e-21 seq333 104 2e-17 seq1879 96.9 3e-15 seq334 96.9 3e-15 >seq2815 Length=71442 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 59151 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59210 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| |||||||||||||||||||| |||||||| Sbjct 59211 GACACGATCGAAAATGTCAAAGCGAAGATTCAAGACAAAGAAGGAATACCACCCGATCAG 59270 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | || |||||||| Sbjct 59271 CAACGTCTTATTTTTGCCGG 59290 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 59587 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59646 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 59647 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 59706 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 59707 CAACGGCTCATCTTTGCAGG 59726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || || | || || ||||| || ||||| || || || ||||| ||||| Sbjct 58080 ACGATGCAAATTTTCGTCAAGACCCTAACTGGCAAAACGATCACACTGGAAGTCGAAGCG 58139 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || ||| ||||| || ||||| ||||||||||| ||||| Sbjct 58140 TCGGACACCATCGAAAACGTCAAAGCGAAGATTCAGGACAAGGAAGGAATACCACCCGAC 58199 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || || |||| || || || Sbjct 58200 CAGCAGCGCCTGATTTTCGCTGG 58222 >seq333 Length=310902 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 44451 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44510 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 44511 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44570 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 44571 CAACGGCTCATCTTTGCAGG 44590 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 43191 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43250 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 43251 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43310 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 43311 CAACGGCTCATCTTTGCAGG 43330 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 43443 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43502 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 43503 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43562 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 43563 CAACGGCTCATCTTTGCAGG 43582 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 43695 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43754 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 43755 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43814 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 43815 CAACGGCTCATCTTTGCAGG 43834 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 43947 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44006 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 44007 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44066 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 44067 CAACGGCTCATCTTTGCAGG 44086 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||||||||| || ||||| ||||| || || | Sbjct 44199 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44258 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || ||||| ||||||||||| |||||||| Sbjct 44259 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44318 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | |||||||| || Sbjct 44319 CAACGGCTCATCTTTGCAGG 44338 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||| || || || || || || ||||| ||||| | Sbjct 40062 ATGCAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCGTCA 40121 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||||| || |||||||||||| || || || || || ||||| Sbjct 40122 GACACCATCGAGAACGTGAAAACCAA-GATCCAAGACAAGGAGGGCATCCCACCGGATCA 40180 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 || ||| | ||||| ||||| || Sbjct 40181 GCAGCGTCTAATCTTCGCCGGTAA 40204 >seq1879 Length=657420 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| ||||| ||||| || || || ||||| || || ||| | Sbjct 526615 GATGCAGATTTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTGGAGGCCTC 526556 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || || || || |||||||| || || |||||||| || Sbjct 526555 GGATACGATTGAAAATGTGAAGGCTAAAATACAGGACAAAGAGGGCATTCCTCCCGACCA 526496 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||||||| Sbjct 526495 GCAACGCTTGATCTTTGCCGG 526475 >seq334 Length=798041 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||| | ||||| || ||||| || |||||||| || || || Sbjct 402970 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACTATCACTCTCGAAGTGGAGGCGTCC 402911 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| ||||| ||||| || || || ||||| Sbjct 402910 GACACCATTGAGAACGTTAAGGCTAAA-ATCCAGGACAAGGAAGGCATCCCGCCAGATCA 402852 Query 24823 ACAACGTTTGATCTTTGCCGGGAAA 24847 || ||| | ||||| || || ||| Sbjct 402851 GCAGCGTCTCATCTTCGCAGGTAAA 402827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || ||||| || || || ||| | Sbjct 405368 GATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACGATCACGCTGGAGGTGGAGGCCTC 405309 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || |||||||| ||||| ||||| Sbjct 405308 TGACACGATCGAGAATGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCTGATCA 405249 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || ||| | ||||| || || Sbjct 405248 GCAGCGTCTAATCTTCGCTGG 405228 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || |||||||| || |||||||| || || || | Sbjct 403681 ATGCAGATCTTCGTGAAGACTCTTACGGGTAAAACCATCACGCTCGAGGTGGAGGCTTCT 403622 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||| ||||| || || || || || || || Sbjct 403621 GACACGATCGAGAACGTTAAGGC-AAAGATCCAGGACAAGGAGGGCATCCCACCTGACCA 403563 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || ||||||| || || Sbjct 403562 ACAGCGGCTGATCTTCGCTGG 403542 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| |||| || || || ||||| || || || || || | Sbjct 404396 ATGCAGATCTTCGTCAAGACGTTAACTGGCAAGACGATTACTCTTGAGGTGGAGGCATCA 404337 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| || | ||| |||||||||||||| || || ||||| || || Sbjct 404336 GACACAATTGAGAACGTCAAGGCGAAA-ATCCAAGACAAAGAGGGCATTCCTCCAGACCA 404278 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||| | ||||| || || Sbjct 404277 ACAACGACTTATCTTCGCTGG 404257 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || ||||| || || | Sbjct 404908 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAGACGATAACTCTTGAAGTGGAGGCATCG 404849 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||| |||||||| ||||| ||||| || |||||| Sbjct 404848 GATACGATCGAGAACGTGAAAGCGAAGATACAAGACAAGGAAGGCATACCGCCTGATCAA 404789 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || | ||||| || || || Sbjct 404788 CAGCGACTTATCTTCGCTGGTAA 404766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449769058631960