Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_022090.1 Length=134643 Score E Sequences producing significant alignments: (Bits) Value seq3162 401 5e-107 seq616 159 3e-34 >seq3162 Length=12458 Score = 401 bits (444), Expect = 5e-107 Identities = 813/1200 (68%), Gaps = 37/1200 (3%) Strand=Plus/Minus Query 128628 TTTGTATGATACTCCAAAGGCTTAAATTCCCATACAACGAATGGTACACATATTTAGTAT 128687 || |||| | |||| | ||| ||||||| |||||||| || |||| || | ||| Sbjct 6180 TTGGTATAACTCTCCGAGGGCGTAAATTCGGATACAACGCATCCTACATATCAGCATTAT 6121 Query 128688 CTTATTTGTGATAACTTA----AATATTATAGTTAGCTAAATTAATACTAGCATTAAGGT 128743 ||| || |||||| ||| ||| ||||| || | | ||||||||| || || | | Sbjct 6120 CTTCTTAGTGATA--TTATGCTAAT-TTATATTTTGAAAGATTAATACTTGCGTTTAAAT 6064 Query 128744 CTCTATCAATACTAAAACCACATTTACATTTAAATACTCTGTCTGATAGTTTTAGGTTTT 128803 ||||||||||| ||| ||||| |||||||| | ||||| ||| ||||||| | || Sbjct 6063 CTCTATCAATATTAAGTCCACAGCTACATTTATAAACTCTATCTTTAAGTTTTAAATCTT 6004 Query 128804 TATGGATACTACCACATGTAGAACATGTTTTACTAGAAGGGAAAAATCTATCTACAATAA 128863 | | | | |||||| | ||| || || || || ||||||||||| | | | Sbjct 6003 TTTTAACCTTTCCACATTGACTACAAGTCTTTGATGATGGATAAAATCTATCTGCTACTA 5944 Query 128864 CAAGTTCAATTCCTTGTCTTTCACATTTGTATTCTAATTGCCTTCTAAACTCATAAAATC 128923 | | ||||||||| || ||| || |||| | ||| ||| |||| |||||||| | Sbjct 5943 CTAACTCAATTCCTCTAAATTTACACTTATATTGAAGTTGTCTTTTAAATTCATAAAAAC 5884 Query 128924 CTTGTTTTTGTATTGCTTTAGCTAAATGTCTATTCTTCATCATCCCTTTTACATTCAAAT 128983 |||||||| ||| || | || ||||||| |||| |||||||| ||||| ||||| |||| Sbjct 5883 CTTGTTTTCTTATGGCATCAGATAAATGTTTATTTTTCATCATTCCTTTAACATTTAAAT 5824 Query 128984 CTTCAATAACAATTCTTCTAGGTTTGGTTTTCACGATAGAAGATGTTACTTGATGTAAAT 129043 |||| || |||| ||| || ||||||||||| ||| | ||| || ||| | || Sbjct 5823 CTTCTATTACAACTCTGTATGGCTTGGTTTTCACTATACTTGTTGTACTTTCATGAAGAT 5764 Query 129044 AGTTTTTACGAATATTAGACAATCTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTA 129103 |||| || | ||| |||| |||||||| || | ||| || ||||| ||||||| Sbjct 5763 AGTTATTTCTAATGTTAGCCAATCTTCTATGGATTTGTTGTATACACTTTTCAAGTTTTA 5704 Query 129104 TGATATTGCAAGTTTTGACAAACGTACTCCCTTCTTTAtttttttGGTATTTGAAAGATA 129163 | ||||| |||||||||| || | |||| ||||||||||| ||||| | | Sbjct 5703 TTATATTTTTAGTTTTGACATACTCCTTTCCTTTTTTATTTTTTTCATATTTTCTACTCA 5644 Query 129164 CCTTACGTTGCAACCTACGTAATCGTTTTTCTAATTTTTTAACCTTTAT-TGTTTTATTA 129222 | | | ||| | || ||||| ||||| |||||| | || || ||||||| Sbjct 5643 CTTGTCTTTGTAGTCTTTTTAATCTCTTTTC-AATTTTCCTAACTACATAACTTTTATTT 5585 Query 129223 ATATTACCATAAATA--GTACCATCTGAACATACAGCTAACTCTTTTATCCCTAAATCAA 129280 ||||| | |||||| |||||||| || |||| ||||| ||| | ||||| || | Sbjct 5584 ATATTTC--TAAATACTGTACCATCAGAGCATATTGCTAAAATTTTCAATCCTAAGTCTA 5527 Query 129281 TACCTAAGGACTCGTTGGTCAAATCTTCATATTTATTTTCTTCTTCTATAGAGATACTTA 129340 | ||||| || | | || |||||||| | | | ||||| ||||||| | | Sbjct 5526 TTCCTAATGATACATCTGTTAAATCTTCTTTAATTTGTTCTTTTTCTATACCTACCGAGA 5467 Query 129341 TATACCAGTATTTACCATCAAAAGTAATTCTAGGATTGTAGTACTTAGTGTCTATAGGTA 129400 ||||||| || || |||| | | || | |||||| |||||| | ||||||| Sbjct 5466 TATACCAATACTTGTTATCATATGATATACGAGGATTACTATACTTAACTCCAATAGGTA 5407 Query 129401 GTTGTTCAGAAGTTCTAACCCAACCTACCTTTTC--TATT-AGTACTTTTTTCTCTTTTA 129457 |||||||| |||| | | |||||| |||||||| |||| | || | | || ||||| | Sbjct 5406 GTTGTTCATTAGTTTTTATCCAACCAACCTTTTCAATATTAACTAATCTATTTTCTTTAA 5347 Query 129458 CTACTA---GTGCATACGTGTCATTATAGAAACTAGGTCTTGTTTTCTTTTTAGATTTGA 129514 || || | ||| | ||||||||||| | | || | ||||||| | | Sbjct 5346 CTTTTAACTTTACAT---TATCATTATAGAA---GGATTTTTTACTCTTTTT---TCTAC 5296 Query 129515 ACTTA------GGGAAACCAGATTTCNNNNNNNNNNNNNNNNNATATGCATTGCATGCGT 129568 |||| || | | ||| ||| ||||| || || | Sbjct 5295 TCTTAAGTCGTGGTTTATCTGATAATCCATTGAAGAATCTTTTATAAGCATTACAAGCAT 5236 Query 129569 CTTTAACTGCTTGTTTAGGAACATTGTTACTTACTTCATGTAACCAACTAAACTCTTTAG 129628 |||| || |||||||||| |||||| ||| |||||||| ||||||| | || || | Sbjct 5235 CTTTTACAGCTTGTTTAGCAACATTATTAGATACTTCATTTAACCAATTTAA---TTCAT 5179 Query 129629 TTTTCTTTAGTTGTGTAATTTCTTTTCTTAATACTGTGTCTTGTATAAATTTTTTACCTT 129688 |||||||||| | || | ||| ||||| || | | || | |||||||||| ||| | Sbjct 5178 TTTTCTTTAGCTTGGTTAATTCCTTTCTCAAAATTCCATCATATATAAATTTTCCACCAT 5119 Query 129689 GTTCGTAATTTTCTTGCTGTTTTGCTATAGTCCAATTATATATAAATCGTGCTATACCAG 129748 ||| |||||||||| ||||||| | ||||||||||||||||| | ||| | ||| Sbjct 5118 TTTCATAATTTTCTTCTTGTTTTGAAAGTGTCCAATTATATATAAACCTTGCAGTTCCAA 5059 Query 129749 CTGATTTACATAATTTTAATTTTTGTTGCTTGGTAGGTTTAAGTCTGACTTTTTTCGTTA 129808 |||| | || | |||| | |||| | | || | | ||| |||||||||| || Sbjct 5058 CTGACTGCCAAAGTTTTTTCTCTTGTATTTCACTTGGATACAATCTAACTTTTTTCGATA 4999 >seq616 Length=43856 Score = 159 bits (176), Expect = 3e-34 Identities = 289/421 (69%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 128710 TTATAGTTAGCTAAATTAATACTAGCATTAAGGTCTCTATCAATACTAAAACCACATTT- 128768 ||||| || |||||||||||||| ||||| ||||||| ||| ||| | ||| || Sbjct 37855 TTATAATTTGCTAAATTAATACTTGCATTTTTATCTCTATGAATTATAAGATTACACTTT 37796 Query 128769 --------ACATTTAAATACTCTGTCTGATAGTTTTAGGTTTTTATGGATACTACCACAT 128820 |||| || | || ||| |||| ||| | || | |||| | ||| Sbjct 37795 GGATTGGTACATATATAGGTCCTATCTTTTAGTCTTAAATCCTTTTTGATAGTTTTACAA 37736 Query 128821 GTAGAACATGTTTTACTAGAAGGGAAAAATCTATCTACAATAACAAGTTCAATTCCTTGT 128880 |||||| ||||||| || ||||||||||| | |||||| ||||||||| | Sbjct 37735 CAAGAACAAAGTTTACTACTTGGATAAAATCTATCTGCTTTAACAAATTCAATTCCATTC 37676 Query 128881 CTTTCACATTTGTATTCTA--ATTGCCTTCTAAACTCATAAAATCCTTGTTTTTGTATTG 128938 | | | |||| ||||| | || || | |||| | || ||| | ||||| | || | Sbjct 37675 CACTTAAATTTATATTCAAGTATAGC--TATAAATTTATTAAAACATTGTTCTGAAATCG 37618 Query 128939 CTTTAGCTAAATGTCTATTCTTCATCATCCCTTTTACATTCAAATCTTCAATAACAATTC 128998 |||||| ||||||| |||| || ||||| ||||||||||| |||||||||| || | || Sbjct 37617 CTTTAGATAAATGTTTATTTTTTATCATTCCTTTTACATTTAAATCTTCAACTACTACTC 37558 Query 128999 TTCTAGGTTTGGTTTTCACGATAGAAGATGTTACTTGATGTAAATAGTTTTTACGAATAT 129058 | | ||| || |||||||| || | | | |||||||| | ||| | ||||| Sbjct 37557 TACAAGGCTTAGTTTTCACTATTGTATTAATAGTTTGATGTATGTGATTTAATCTAATAT 37498 Query 129059 TAGACAATCTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTATGATATTGCAAGTTT 129118 | |||| || ||| | | ||| || |||||||| | |||||||||||| ||||| Sbjct 37497 CTG-CAATTTTTTTTGAACAATTTTTATCTGTTTTTCAATTTTTATGATATTTTGAGTTT 37439 Query 129119 T 129119 | Sbjct 37438 T 37438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430612810898508