Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17198 136 6e-26 seq2642 127 3e-23 seq1219 125 1e-22 seq22425 118 2e-20 seq2585 89.7 8e-12 >seq17198 Length=501 Score = 136 bits (150), Expect = 6e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||||||||| || |||||||| | || || || || | | Sbjct 109 TGTACTTGGTGACGGCCTTGGTACCCTCAGATACGGCGTGTTTCGCGAGCTCTCCAGGAA 168 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| |||| ||||| | ||||| | ||| || || || || Sbjct 169 GAATGAGGCGGACGGACGTCTGCACTTCGCGAGACGAGATGGTTGAACGTTTATTGTAAT 228 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || |||| |||||||| | | ||||| |||| | ||| || || ||||| |||| Sbjct 229 GCGCAAGTCGGCTGGCCTCGGCGGCAATGCGTTCGAAGACGTCATTCACGAACGAATTCA 288 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| || ||| || || ||| || || |||||||||||||| Sbjct 289 TGATCGACATCGCCTTCGAGGAAATACCGGTGTCAGGATGGACCTGCTTGAGCAC 343 >seq2642 Length=345336 Score = 127 bits (140), Expect = 3e-23 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| ||||| || || || || || |||||| | |||| || ||| | | Sbjct 171074 TACTTTGTGACCGCCTTAGTGCCTTCAGAAACAGCGTGCTTCGCCAACTCTCCGGGAAGA 171133 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || |||||||| ||||| || ||||| | ||| || | |||||||| | || Sbjct 171134 ATGAGACGCACGGCTGTCTGAATTTCGCGAGAAGAGATGGTCGTACGCTTGTTGTAGTGC 171193 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || | || || | | || || |||| | |||||| ||||||||||||||| Sbjct 171194 GCAAGTCGACTCGCTTCCGCTGCAATCCGCTCGAAAACGTCGTTCACAAACGAGTTCATG 171253 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || ||||||| ||| || |||||| || || || |||||||||||||| Sbjct 171254 ATTGACATCGCTTTCGACGAAATGCCCGTATCCGGATGTACCTGCTTGAGCAC 171306 Score = 105 bits (116), Expect = 1e-16 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| ||||| || || || || || || ||| | || || || ||| ||| Sbjct 177472 TATTTGGTGACTGCCTTTGTGCCTTCCGAAACAGCATGCTTCGCAAGCTCTCCGGGCAGA 177413 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || || ||||| || ||||| ||||| | |||||| || || || || Sbjct 177412 ATGAGCCGAACGGCTGTTTGGATTTCGCGAGACGAGATCGTCGATCGTTTATTGTATTGC 177353 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || |||| || || | | || || |||| | |||||| || |||||||||||| Sbjct 177352 GCTAGACGGCTAGCTTCTGCAGCAATCCGCTCGAAAACGTCGTTCACGAACGAGTTCATG 177293 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || ||||||| ||| || |||||| || || || |||||||| ||||| Sbjct 177292 ATTGACATCGCTTTCGACGAAATGCCCGTATCCGGATGTACCTGCTTCAGCAC 177240 >seq1219 Length=419765 Score = 125 bits (138), Expect = 1e-22 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| ||||| || || || || || || || | || ||||| ||| | | | Sbjct 315818 TATTTGGTGACTGCCTTCGTGCCTTCCGAAACAGCATGTTTCGCAAGTTCCCCGGGTAGG 315877 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || ||||| |||| || ||||||||||| | ||| || || ||||| || Sbjct 315878 ATGAGGCGAACGGATGTTTGGATCTCGCGAGACGAGATTGTCGATCGTTTGTTGTATTGC 315937 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| |||| || || | |||| || |||| | |||||| |||||||||||||| Sbjct 315938 GCCAGACGGCTAGCTTCCGCAGCGATCCGCTCGAAAACGTCGTTTACAAACGAGTTCATA 315997 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||||| ||| || |||||| ||| || ||||||||| | || ||| Sbjct 315998 ATCGACATCGCTTTCGACGAAATGCCCGTGTCTGGATGCACCTGCCTAAGTACC 316051 >seq22425 Length=2500 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 1498 TGTACTTCGTAACTGCCTTAGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCTCCCGGAA 1557 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || ||||| ||||| || || || | | ||| ||| | ||| |||| | Sbjct 1558 GGATAAGACGGACGGCTGTCTGAATTTCCCGAGAGGAGATGGTGGTACGCCTGTTGTAGT 1617 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || | || || | | || | |||| | |||||| || |||||||||| Sbjct 1618 GCGCAAGCCGACTCGCTTCCGCTGCAATTCTTTCGAAGACGTCGTTCACGAACGAGTTCA 1677 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | |||||||| | || || ||||| ||| || || |||||||||||||| Sbjct 1678 TAATCGACATAGCCTTAGATGAAATGCCAGTGTCCGGATGAACCTGCTTGAGCAC 1732 >seq2585 Length=1103192 Score = 89.7 bits (98), Expect = 8e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| ||||| || ||||| || || || ||| | |||| |||||| | | Sbjct 947415 TACTTAGTGACTGCCTTTGTGCCCTCCGATACAGCATGCTTAGCCAATTCGCCCGGTAGA 947474 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || || || || ||||| |||||||| | || ||| || ||||| | | Sbjct 947475 ATAAGCCGTACAGCTGTCTGAATCTCGCGCGACGAAATTGTGGAACGTTTGTTGTAGTGA 947534 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || ||| ||||| | | || || |||| | || || |||||||||||||| Sbjct 947535 GCAAGATGGCTCGCCTCAGCAGCAATACGTTCGAATACATCATTCACAAACGAGTTCATA 947594 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 ||| |||| | || || | || || ||||||||||| ||||||||| Sbjct 947595 ATCAACATGGCCTTCGATGACACACCTGTATCTGGGTGCACCTGTTTGAGCACC 947648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913814996659223