Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq334 93.3 3e-14 seq2815 82.4 5e-11 seq1879 82.4 5e-11 seq333 82.4 5e-11 >seq334 Length=798041 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| || |||||||| ||||| || || || |||| | || |||||||| | ||| || Sbjct 404765 CTTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTT 404824 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||| ||| | |||| || ||||| || |||| ||||| |||||||| || Sbjct 404825 CGCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGT 404884 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| |||||||||||||| Sbjct 404885 GAGGGTCTTGACAAAGATCTGCAT 404908 >seq2815 Length=71442 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| |||||||| || || || |||||||| | || | ||||||||||| | || || Sbjct 60179 CTTACCGGCGAAAATTAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATCTT 60120 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | | || | || |||||||| || | ||||| ||||| || || Sbjct 60119 CGCCTTCACGTTTTCGATTGTATCCGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGT 60060 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| ||||||||||||||| Sbjct 60059 GAGTGTCTTGACAAAGATCTGCATG 60035 >seq1879 Length=657420 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||| ||||||| ||||||||||| | || | ||||| ||||| | |||||| Sbjct 526475 CCGGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGTATTTTAGCC 526534 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || | | |||| || |||||| || || | |||||| ||||| ||||| ||| Sbjct 526535 TTCACATTTTCAATCGTATCCGAGGCCTCCACCTCGAGGGTTATCGTCTTACCCGTTAGG 526594 Query 34958 GTCTTTACAAAGATCTGCAT 34977 || || || || |||||||| Sbjct 526595 GTTTTGACGAAAATCTGCAT 526614 >seq333 Length=310902 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| |||||||| || || || |||||||| | || | ||||||||||| | || || Sbjct 45046 CTTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTT 44987 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 || ||| | | || | || |||||||| || | ||||| ||||| || || Sbjct 44986 CGCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGT 44927 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| ||||||||||||||| Sbjct 44926 GAGTGTCTTGACAAAGATCTGCATG 44902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325602071858483