Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_022918.1 Length=132123 Score E Sequences producing significant alignments: (Bits) Value seq3162 529 2e-145 >seq3162 Length=12458 Score = 529 bits (586), Expect = 2e-145 Identities = 805/1132 (71%), Gaps = 23/1132 (2%) Strand=Plus/Plus Query 72227 GGAACAGCAAGGTTTATCTACAATTGGG---TTTTAGGGAAACAAAAAGAAAATTATAAG 72283 ||||| ||||||||||| || |||||| ||| | |||||| ||||||||||| | Sbjct 5061 GGAACTGCAAGGTTTATATATAATTGGACACTTTCA---AAACAAGAAGAAAATTATGAA 5117 Query 72284 AAAGGTAATAAGTTTATATCTGATTCTGTACTAAGAAAAGAAATTACTCAACTAAAGAAA 72343 || ||| || ||||||| |||| | | ||||| ||| | || | ||||||||| Sbjct 5118 AATGGTGGAAAATTTATATATGATGGAATTTTGAGAAAGGAATTAACCAAGCTAAAGAAA 5177 Query 72344 ACTGAAGAATTTAATTGGTTAAATGAAGTAAGTAACAATGTACCTAAACAAGCTGTCAAA 72403 | |||| || |||||||||||||||||| ||| ||||| ||||||||||||| ||| Sbjct 5178 AATGAA---TTAAATTGGTTAAATGAAGTATCTAATAATGTTGCTAAACAAGCTGTAAAA 5234 Query 72404 GATGCTTGTAATTCTTATAAGAGATTTTTTAAAGGGCAAGCTAAATTTCCTAAGT-TTAA 72462 |||||||||||| ||||||| ||||| || || || | | | || | | | |||| Sbjct 5235 GATGCTTGTAATGCTTATAAAAGATTCTTCAATGGATTATC-AGATAAACCACGACTTAA 5293 Query 72463 ATctaaaaagaaaactaaacctagtttctacaatgatacacaaaaattaaaggtaaaaga 72522 || ||| || | |||| ||||| ||||||| ||| ||||| || ||||| Sbjct 5294 GAGTAGAAAAAAGAGTAAAAAATCCTTCTATAATGATAATGTAAAGTTAAAAGTTAAAGA 5353 Query 72523 aaaaCTAGTA-TTACTA--GAAAAAGTAGGATGGGTTAGGACTTCTGAACAATTACCTAT 72579 ||| | || ||| || ||||| || || ||| | | ||| ||||||| ||||||| Sbjct 5354 AAATAGATTAGTTAATATTGAAAAGGTTGGTTGGATAAAAACTAATGAACAACTACCTAT 5413 Query 72580 AGATACAAAATATTATAATCCAAGAATTACATTTGATGGTAAGTATTGGTATCTAAGTGT 72639 | || ||| |||||| | || ||| |||| |||||||||||| | || Sbjct 5414 TGGAGTTAAGTATAGTAATCCTCGTATATCATATGATAACAAGTATTGGTATATCTCGGT 5473 Query 72640 TTCCATAGAAGAAGAAAATAAATATGAAAAATTAACAGAAGAATCTTTAGGAATTGACTT 72699 |||||| ||||| | | | ||| | |||||||| | ||| |||||||| ||||| Sbjct 5474 AGGTATAGAAAAAGAACAAATTAAAGAAGATTTAACAGATGTATCATTAGGAATAGACTT 5533 Query 72700 AGGAATAAAAGAATTAGCTATATGTTCAGATGGAACCATTTATGGTAATATTAATaaaac 72759 |||| | ||| ||||| ||||| || ||||| || | | | | ||||| |||||| Sbjct 5534 AGGATTGAAAATTTTAGCAATATGCTCTGATGGTACAGTATTTAGAAATATAAATAAA-- 5591 Query 72760 agtaa--aagttaaaaagttagaaaaaaGATTACGTAGATTGCAACGTAAGGTATCTCGT 72817 ||| | ||||| || | ||||| |||||| ||| | ||| | | || | | Sbjct 5592 AGTTATGTAGTTAGGAAAATTGAAAAGAGATTAAAAAGACTACAAAGACAAGTGAGTAGA 5651 Query 72818 AAATACCAAAACAATAAAGAAGGGAGTACGTTTGTCAAAACTTGTAATATTATAAAACTT 72877 ||||| |||| |||||| |||| | || |||||||||| ||||| ||||||||| Sbjct 5652 AAATATGAAAAAAATAAAAAAGGAAAGGAGTATGTCAAAACTAAAAATATAATAAAACTT 5711 Query 72878 GAAAAACAAATTAAACTCTTACAACGAAGATTGTCTAACATCCGTAAAAATCATTTACAT 72937 ||||| || ||| | || |||||||| ||||||| | || || || | ||| Sbjct 5712 GAAAAGTGTATACAACAAATCCATAGAAGATTGGCTAACATTAGAAATAACTATCTTCAT 5771 Query 72938 CAAACAACAACTTCTATTGTGAAAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAAT 72997 ||| ||||| ||| ||||||||||| || ||| |||| ||||||||||| ||| Sbjct 5772 GAAAGTACAACAAGTATAGTGAAAACCAAGCCATACAGAGTTGTAATAGAAGATTTAAAT 5831 Query 72998 GTAAGTGGTATGATGAAAAATAGACATCTAGCTAAAGCAATACAAAAACAGAGTTTTTAT 73057 || | || ||||||||||||| |||| || || | || ||| |||||| |||||||| Sbjct 5832 GTTAAAGGAATGATGAAAAATAAACATTTATCTGATGCCATAAGAAAACAAGGTTTTTAT 5891 Query 73058 GAATTTAGAAGACAATTAGAATACAAGTGTAAAAGAAAAGGTATCGAACTTATTACT-GC 73116 ||||||| ||||||| | |||| ||||||||| | ||| || | | ||| || | || Sbjct 5892 GAATTTAAAAGACAACTTCAATATAAGTGTAAATTTAGAGGAATTG-AGTTAGTAGTAGC 5950 Query 73117 TGATAGGTTTTTCCCGTCAAGTAAAACATGTTCTAGTTGTGGAATTATTAATAAAAACTT 73176 ||||| |||| || ||| || || ||| | ||||||| |||| ||| | || Sbjct 5951 AGATAGATTTTATCCATCATCAAAGACTTGTAGTCAATGTGGAAAGGTTAAAAAAGATTT 6010 Query 73177 AAAACTTTCAGATAGAGTATTTAACTGTGAGTGTGGATTTAGTATTGATAGAGACTTTAA 73236 ||||||| ||||||||| | ||| ||| |||||| ||| |||||||||||| || || Sbjct 6011 AAAACTTAAAGATAGAGTTTATAAATGTAGCTGTGGACTTAATATTGATAGAGATTTAAA 6070 Query 73237 TGCTAGTGTTAATTTAGCTAATTATAATATT--TAGACTATCACTAACAAGATACTAAGT 73294 || ||| ||||| | | || ||||| ||| | | ||||||||| |||||| | Sbjct 6071 CGCAAGTATTAATCTTTCAAAATATAA-ATTAGCATAATATCACTAAGAAGATAATGCTG 6129 Query 73295 ATATGTACCTTTCGTTGTATGGGAATTTACGCCTTTGGAGTATTATAGCAAA 73346 ||||||| | |||||||| ||||||||||| | |||| ||||| |||| Sbjct 6130 ATATGTAGGATGCGTTGTATCCGAATTTACGCCCTCGGAGAGTTATACCAAA 6181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422551057284468