Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1344 311 6e-79 seq2524 122 7e-22 >seq1344 Length=202344 Score = 311 bits (344), Expect = 6e-79 Identities = 829/1249 (66%), Gaps = 31/1249 (2%) Strand=Plus/Minus Query 281642 GTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGA 281701 ||||| | ||| || | |||||||| | |||||| || ||||| | |||||| || || Sbjct 96561 GTGTTACGATCGATTAAGTTGGTCATCACACCACCGGCCGTTTCAATACCAAGTGATAGT 96502 Query 281702 GGAGTGACATCAAC---TAGGACAATATTTTGAAGTTTT-TCATCAGTTTGACCAACAAG 281757 || | ||||| || ||||||| | ||| |||||| || | || || | ||| Sbjct 96501 GGTGCAACATCGACCAATAGGACA-TCCTTTACAGTTTTGTCTT--GTACTCCCGA-AAG 96446 Query 281758 AATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATT 281817 ||| || ||||||| ||| || ||||| || || |||||||| || || | | | ||| Sbjct 96445 AATTGCCGCTTGAACAGCCGCTCCATAGGCGACTGCTTCATCGGGGTTGATCGAATGATT 96386 Query 281818 TAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGA 281877 |||| ||||||||| ||||| | | | | || | || || |||||||||| ||| Sbjct 96385 CAGTTCTTTACCATTAAAAAATTCGGCTAACATTTTTTGCACTTTTGGAATACGAGTTGA 96326 Query 281878 TCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAAC 281937 || ||||| | | || |||| | || ||| |||| | || |||| | | Sbjct 96325 ACCGCCAACAAGAATAACCTCATCAATTTGACGTTTCTCCAAATGTGCATCCGTAATCGC 96266 Query 281938 TTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGC 281997 ||| || || |||||||| | ||| | ||| || | || || || || Sbjct 96265 TTTCTCTACTGGTTCAAGCGTTTTACGAAAAAGGTCAATGCATAACTCCTCAAAACGTGC 96206 Query 281998 TCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT 282057 | | || | ||| ||| ||||| || | ||| ||| ||||| || | Sbjct 96205 ACGTGAAATTTTCGAATTCATATCCATTCCCTCATATAAACTATCGACTTCGATTACCGC 96146 Query 282058 TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAA 282117 | ||| ||| |||| | |||||||||||||||||| || || | || | || || Sbjct 96145 CTCAGTTGAACTCGATAAAGTACGTTTAGCACGTTCACAAGCCGTACGAAGCCGTCTCAA 96086 Query 282118 GGCTTTTG--CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACAC 282175 | | | | || ||||| | |||| | ||| | ||||| ||||| ||| | Sbjct 96085 CGATCTAGGGCTTCTTGAT--ATATCTTTACCGGTTTTACGTTTGAATTCTTCGACAAAA 96028 Query 282176 CATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCT 282235 || | || | |||| || ||||| || || ||||| | |||| || | ||| | | Sbjct 96027 AATTTCACCATGCGATCGTCGAAATCCTCTCCACCCAAATGCGTATCACCGGCCGTTGAT 95968 Query 282236 CTTACTTGGAA--AAGT-CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCA 282292 | || | ||| ||| || || | | ||||||| | |||||| || ||||| Sbjct 95967 TTGACCTCGAATAAAGAGCCTTCAGCGATTGACAAAATTGAAACATCGAATGTGCCACCG 95908 Query 282293 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGC 282351 || | |||||| | || ||||| | || | |||| ||| |||||||||||||| || Sbjct 95907 CCTAAATCAAATACGAGCACATTTTTATCCTC-TCTTAATTTCTTATCAAGACCATAGGC 95849 Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411 || ||||||||||| || |||||||| || | || ||||| || ||||||||| | || Sbjct 95848 AAGTGCAGCAGCAGTAGGCTCATTAATGATACGTAACACATTGAGCCCAGCAATTGTGCC 95789 Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| || ||||||| ||| || || |||||||| || || || | |||||| Sbjct 95788 CGCATCTTTGGTCGCTTGTCGTTGACTGTCATTGAAATATGCCGGTACGGTTACAACGGC 95729 Query 282472 ATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCAT 282531 |||| |||| | |||| | |||| || || | |||||| || |||||||| Sbjct 95728 ATCTCTTACCGGATGGCCAACAAAAGCTTCAGCAGTCTCTTTCATCTTCACCAAAATCAT 95669 Query 282532 TGATGAAATTTGTTCTGGAG--AATATTGCTTGGATTCATTTTGATATGATACTTCAAAA 282589 ||||||||| | ||| |||| || ||| || ||| || | || ||||| || Sbjct 95668 TGATGAAATCTCTTCGGGAGTAAAAATTCGTT--TTTCGCCTTTAAATTCTACTTGAACG 95611 Query 282590 TATGGTTTATTACCAACATT---AATAACTTTAAATGGCCAATATTTCATATCTGATTGA 282646 ||| ||||| || | || || || ||||||| | ||||||| ||| Sbjct 95610 GCCGGT---TTACCGTTTTTTGCTACAATCTTGAACGGCCAATGTCGCATATCTTCTTG- 95555 Query 282647 ACACTTT--GGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGG 282704 |||||| | || | | | | ||||| | |||||||| ||||| | ||||| Sbjct 95554 -CACTTTCGGATCGTCCATTTTCCGTCCAATAAGGCGTTTTGCGTCAAATACCGTATTTT 95496 Query 282705 TTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAA 282764 ||||| || |||||| | || | || || || || | || || || || | Sbjct 95495 CAGGATTTCTGGCCACTTGATCATATGCCGGATTGCCGATTAGCCGCTCGGTATCGGTGA 95436 Query 282765 ATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTAC 282824 ||| |||||||| || ||||| ||| |||||||| || ||||||||||| ||||| | Sbjct 95435 ATGCCACATATGAAGGTGTTGTCTTATTGCCTTGATCGTTGGCAATAATTTCCACTTTGC 95376 Query 282825 CATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 ||| ||| |||| || |||||||| | || || |||| ||||| || Sbjct 95375 CATATTGAAATACGCCAACACAACTGTACGTCGTGCCTAGGTCAATTCC 95327 >seq2524 Length=117457 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||| || || | ||||||||| || |||||||| ||||| | | ||| Sbjct 93326 TTTTTGTCCAAACCGTATGCGATAGCAGCAGCGGTCGGTTCATTGATAATACGAAGCACA 93267 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || |||||||| |||||||| | ||| || |||||||| ||| Sbjct 93266 TTCAGACCAGCAATTGCACCCGCATCTTTGGTGGCTTGACGTTGCGAGTCGTTAAAGTAT 93207 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||||| ||| |||| Sbjct 93206 GCTGGTACAGTAACAACCGCAT 93185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739508217893682