Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2815 91.5 1e-13 seq334 82.4 7e-11 seq333 82.4 7e-11 >seq2815 Length=71442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||| ||| | || ||||||||||||||||| ||||| ||||||||||| ||| || Sbjct 59292 TACCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCG 59233 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||| | | ||| | |||||| | | || ||||| | || | ||| || ||||| | Sbjct 59232 CTTTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59173 Query 137390 ATGTTTTTACGAATATTTGCATA 137412 ||| || |||||||| |||||| Sbjct 59172 GTGTCTTCACGAATATCTGCATA 59150 >seq334 Length=798041 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 |||||| || |||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 || | | || | ||||| | | || ||||| | ||| | ||||||||||| Sbjct 402887 AGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGT 402946 Query 137388 CAATGTTTTTACGAATATTTGCATA 137412 ||| ||||| ||||| || |||||| Sbjct 402947 CAACGTTTTCACGAAGATCTGCATA 402971 >seq333 Length=310902 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| || |||| ||||| |||||||| || || ||||| || ||||| || || Sbjct 40204 TTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 40145 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||||| | ||| ||||||| ||| | |||||| || || Sbjct 40144 GTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGTT 40085 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | |||||||||||| || ||||| Sbjct 40084 AGTGTTTTTACGAAAATCTGCAT 40062 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||| ||| |||| || |||||||||||||| ||||| ||||| ||||| ||| || Sbjct 44592 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 44533 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||| | | ||| | ||||| | | || ||||| | || | ||| || ||||| | Sbjct 44532 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 44473 Query 137390 ATGTTTTTACGAATATTTGCATA 137412 ||| || |||||||| |||||| Sbjct 44472 GTGTCTTCACGAATATCTGCATA 44450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488404416872400