Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq334 129 1e-24 seq2815 109 1e-18 seq333 104 5e-17 seq8483 95.1 2e-14 >seq334 Length=798041 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || ||||| ||||| || || || || || || ||| | | || Sbjct 402016 ACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCC 402075 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||| || || || || |||| || || ||||| || || || ||||| Sbjct 402076 ATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTT 402135 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| ||||| ||||| || || ||||| | ||| ||||||| || || Sbjct 402136 ATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGAT 402195 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | |||||| || || || ||||| Sbjct 402196 CGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| |||| |||||||| || ||||| |||||||| ||||| ||||| Sbjct 404766 TTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTTC 404825 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || || |||||||| | || ||||| | |||||||||||| || || Sbjct 404826 GCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGTG 404885 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 404886 AGGGTCTTGACAAAGATCTGCATT 404909 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAA 82722 |||| || || |||||||| || | ||||| || || || || || ||||| ||||||| Sbjct 407796 GTTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAA 407855 Query 82723 TCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC 82782 |||| || || || |||||||||||||| | || ||||| | ||| |||||||||| Sbjct 407856 TCTTAGCCTTGACGTTTTCAATCGTATCCGATGCCTCCACTTCGAGAGTGATCGTCTTGC 407915 Query 82783 CTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 | || | ||||| || || || ||||| ||||| Sbjct 407916 CAGTGAGAGTCTTCACGAAGATTTGCATGATTAT 407949 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| |||||||| | || ||||| ||||| |||||||||||||| || ||||| || Sbjct 405228 CCAGCGAAGATTAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC 405287 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || ||||| ||| | || || |||| || |||||||| || || | Sbjct 405288 TTCACATTCTCGATCGTGTCAGAGGCCTCCACCTCCAGCGTGATCGTCTTACCCGTGAGG 405347 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||||||| Sbjct 405348 GTCTTGACAAAGATCTGCAT 405367 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| |||| |||||| |||||||| || || || || ||||| || || || Sbjct 404257 CCAGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCCTCTTTGTCTTGGATTTTCGCC 404316 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || | || || || | ||| ||||||||||| || ||| Sbjct 404317 TTGACGTTCTCAATTGTGTCTGATGCCTCCACCTCAAGAGTAATCGTCTTGCCAGTTAAC 404376 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 404377 GTCTTGACGAAGATCTGCAT 404396 >seq2815 Length=71442 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | ||| ||||| || ||||||||||| || ||||||||||| ||| Sbjct 59290 CCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCGCT 59231 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| ||||| || | || ||||||| || ||||| || || || | Sbjct 59230 TTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59171 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 59170 GTCTTCACGAATATCTGCAT 59151 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 59726 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 59667 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || || || | || ||||||| || ||||| || || || | Sbjct 59666 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59607 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || |||||||||||| Sbjct 59606 GTCTTCACGAATATCTGCATT 59586 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || ||||| | || || || || || || || ||||| || |||||||| Sbjct 60178 TTACCGGCGAAAATTAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATCTTC 60119 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || ||||| || ||||| | || |||||||| |||||||||||||| || Sbjct 60118 GCCTTCACGTTTTCGATTGTATCCGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGTG 60059 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 60058 AGTGTCTTGACAAAGATCTGCAT 60036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| ||| || || || ||||| || ||||| ||||||||||| || Sbjct 58638 CCGGCAAAAATGAGTCGTTGCTGGTCGGGTGGTATCCCCTCCTTGTCTTGAATCTTCGCC 58579 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || ||||| | ||| ||||| | || ||||| || || || | Sbjct 58578 TTGACATTTTCGATAGTATCGGAGGCTTCGACTTCAAGTGTGATCGTTTTACCAGTGAGG 58519 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 58518 GTCTTCACGAAAATCTGCAT 58499 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| || || || | || || || || |||||||||||||| || |||||||| ||| Sbjct 58222 CCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGCT 58163 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || || || | ||| ||||||| || ||||| ||||| || | Sbjct 58162 TTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAGG 58103 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 58102 GTCTTGACGAAAATTTGCAT 58083 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||||||||| |||| ||| || ||||| || ||||| ||||||||||| || Sbjct 60034 CCACCTCGCAAACGCAGGACTAGGTGGAGTGTAGACTCCTTCTGGATATTATAATCCGAG 59975 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 || | | ||||||||| || ||||| || ||||||| Sbjct 59974 AGGGTGCGACCGTCTTCGAGCTGTTTGCCTGCAAAGA 59938 >seq333 Length=310902 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 43330 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43271 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || ||||| | || ||||||| || ||||| || || || | Sbjct 43270 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43211 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 43210 GTCTTCACGAATATCTGCAT 43191 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 43582 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43523 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || ||||| | || ||||||| || ||||| || || || | Sbjct 43522 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43463 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 43462 GTCTTCACGAATATCTGCAT 43443 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 43834 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43775 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || ||||| | || ||||||| || ||||| || || || | Sbjct 43774 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43715 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 43714 GTCTTCACGAATATCTGCAT 43695 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 44086 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44027 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || ||||| | || ||||||| || ||||| || || || | Sbjct 44026 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43967 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 43966 GTCTTCACGAATATCTGCAT 43947 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 44338 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44279 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || ||||| | || ||||||| || ||||| || || || | Sbjct 44278 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44219 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 44218 GTCTTCACGAATATCTGCAT 44199 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||| ||||| || |||||||||||||| || |||||||| | | Sbjct 44590 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44531 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || || || | || ||||||| || ||||| || || || | Sbjct 44530 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44471 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 44470 GTCTTCACGAATATCTGCAT 44451 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || || | || || || || || || || ||||| ||||||||||| Sbjct 45045 TTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTTC 44986 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || ||||| || ||||| | || |||||||| |||||||||||||| || Sbjct 44985 GCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGTG 44926 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 44925 AGTGTCTTGACAAAGATCTGCAT 44903 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || |||||||| | || ||||| || || || || ||||| ||||| ||||| Sbjct 40204 TTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 40145 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||| || || || || || || | ||| ||||| | ||| |||||||| ||||| Sbjct 40144 GTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGTT 40085 Query 82788 AACGTCTTTACAAATATCTGCATTATT 82814 | || ||||| || |||||||||||| Sbjct 40084 AGTGTTTTTACGAAAATCTGCATTATT 40058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||||||||| |||| ||| || || || || ||||| ||||||||||| || Sbjct 44901 CCACCTCGCAAACGCAGGACTAGGTGGAGTGTCGACTCCTTCTGGATATTATAATCCGAA 44842 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 || | | ||||||||| || ||||| || ||||||| Sbjct 44841 AGGGTGCGACCGTCTTCGAGCTGTTTGCCTGCAAAGA 44805 >seq8483 Length=232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| ||| || || || ||||| || ||||| ||||||||||| || Sbjct 3 CCGGCAAAAATGAGTCGTTGCTGGTCGGGTGGTATCCCCTCCTTGTCTTGAATCTTCGCC 62 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || ||||| | ||| ||||| | || ||||| || || || | Sbjct 63 TTGACATTTTCGATAGTATCGGAGGCTTCGACTTCAAGTGTGATCGTTTTACCAGTGAGG 122 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 123 GTCTTCACGAAAATCTGCAT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981539666688523