Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq334 109 5e-19 seq8483 82.4 7e-11 seq2815 82.4 7e-11 >seq334 Length=798041 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| || |||||||| | ||||| ||||| | Sbjct 402231 ATGCAAATCTTCGTTAAGACGCTTACCGGCAAGACGATCACGCTGGAAGTGGAAGCATCC 402172 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || ||| || ||| ||||| ||||| || || || || ||| Sbjct 402171 GATACTATCGAGAATGTGAAAGCGAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAG 402112 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||| |||| || |||||||| || || |||| | | | | || ||||| Sbjct 402111 CAGCGACTTATTTTCGCGGGCAAACAGCTTGAGGATGGACGTACTCTGTCGGACTACAAC 402052 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || |||||||| || ||| ||||| | ||| Sbjct 402051 ATCCAAAAAGAGTCTACCCTTCATCTTGTG 402022 >seq8483 Length=232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || ||| ||||||| | |||||||||||| | Sbjct 142 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 83 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || ||| || || ||||| ||||| ||||| ||| Sbjct 82 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 23 Query 25295 CAAAGACTCATTT 25307 ||| ||||||||| Sbjct 22 CAACGACTCATTT 10 >seq2815 Length=71442 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || ||| ||||||| | |||||||||||| | Sbjct 58499 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 58558 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || ||| || || ||||| ||||| ||||| ||| Sbjct 58559 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 58618 Query 25295 CAAAGACTCATTT 25307 ||| ||||||||| Sbjct 58619 CAACGACTCATTT 58631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444967230966240