Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq22425 104 3e-16 seq2642 100 4e-15 seq2585 96.9 5e-14 seq17198 91.5 2e-12 seq1219 91.5 2e-12 >seq22425 Length=2500 Score = 104 bits (114), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC-AAGTC 724969 |||||| |||||||||||||| || || || ||| ||| | || | ||| | Sbjct 1741 ATCTACCGCGTGCTCAAGCAGGTTCATCCGGACAC---TGG--CAT--TTCATCTAAGGC 1689 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 |||||||| ||||||||||| || |||||| | |||| | || | | || || | Sbjct 1688 TATGTCGATTATGAACTCGTTCGTGAACGACGTCTTCGAAAGAATTGCAGCGGAAGCGAG 1629 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || |||| || ||||| ||| | ||| ||| | | || || || ||||| ||||| Sbjct 1628 TCGGCTTGCGCACTACAACAGGCGTACCACCATCTCCTCTCGGGAAATTCAGACAGCCGT 1569 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || ||| | | || || ||||||| ||||||||| || || ||||| Sbjct 1568 CCGTCTTATCCTTCCGGGAGAGCTGGCCAAGCACGCCGTGTCGGAAGGCAC 1518 >seq2642 Length=345336 Score = 100 bits (110), Expect = 4e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||||||||| |||||| | |||| || || | | || || || Sbjct 171261 ATGTCAATCATGAACTCGTTTGTGAACGACGTTTTCGAGCGGATTGCAGCGGAAGCGAGT 171202 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || |||| || ||||||||| | || ||| | ||||| || ||||| |||||| Sbjct 171201 CGACTTGCGCACTACAACAAGCGTACGACCATCTCTTCTCGCGAAATTCAGACAGCCGTG 171142 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | ||| || |||| | |||||| || || || ||||| Sbjct 171141 CGTCTCATTCTTCCCGGAGAGTTGGCGAAGCACGCTGTTTCTGAAGGCAC 171092 >seq2585 Length=1103192 Score = 96.9 bits (106), Expect = 5e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| ||||||||| ||||||||||| || | || | |||| ||| || Sbjct 947656 ATCTACCGGGTGCTCAAACAGGTGCACCCAGATACAGGTGTGTCATCG------AAGGCC 947603 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||| ||| |||||||||||||| || || | |||| || || | | ||||| | Sbjct 947602 ATGTTGATTATGAACTCGTTTGTGAATGATGTATTCGAACGTATTGCTGCTGAGGCGAGC 947543 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | || |||||| || ||| || |||||||||| ||||| || || Sbjct 947542 CATCTTGCTCACTACAACAAACGTTCCACAATTTCGTCGCGCGAGATTCAGACAGCTGTA 947483 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | |||||| |||| | ||| || || || |||||||| Sbjct 947482 CGGCTTATTCTACCGGGCGAATTGGCTAAGCATGCTGTATCGGAGGGCAC 947433 >seq17198 Length=501 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || || ||| || ||||||| |||||||||||||| || || |||| | Sbjct 367 TCCTATTCGGTCTATATCTACCGTGTGCTCAAGCAGGTCCATCCTGACACCGGTATT--- 311 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 ||||| || | | |||||||||||||| ||||| || || ||| | |||| ||||| Sbjct 310 TCCTCGAA---GGCGATGTCGATCATGAATTCGTTCGTGAATGACGTCTTCGAACGCATT 254 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||||| | || || |||| | ||| || || || ||| | ||||| Sbjct 253 GCCGCCGAGGCCAGCCGACTTGCGCATTACAATAAACGTTCAACCATCTCGTCTCGCGAA 194 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 | ||||| |||| ||||| || | | || || || || | |||||||| || ||| Sbjct 193 GTGCAGACGTCCGTCCGCCTCATTCTTCCTGGAGAGCTCGCGAAACACGCCGTATCTGAG 134 Query 725136 GGCACCA 725142 || |||| Sbjct 133 GGTACCA 127 >seq1219 Length=419765 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||||||||| |||||| | |||| || |||| | || || | Sbjct 316005 ATGTCGATTATGAACTCGTTTGTAAACGACGTTTTCGAGCGGATCGCTGCGGAAGCTAGC 315946 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| | |||||| || || ||| | ||||||||||| || |||| Sbjct 315945 CGTCTGGCGCAATACAACAAACGATCGACAATCTCGTCTCGCGAGATCCAAACATCCGTT 315886 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | | ||| ||||| || | || || || || || ||||| Sbjct 315885 CGCCTCATCCTACCCGGGGAACTTGCGAAACATGCTGTTTCGGAAGGCAC 315836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175606600338834