Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq334 104 2e-17 seq2815 100 3e-16 seq333 89.7 5e-13 >seq334 Length=798041 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || || ||||| ||||||||||| | || | || Sbjct 402014 AGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTC--CGACAGAGTAC 402071 Query 134556 GAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||||||||| || ||||| | |||||||| || || || ||||| | Sbjct 402072 GTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCT 402131 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || ||||| || ||| || || | || ||||| | |||||| || || | Sbjct 402132 CCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCG 402191 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| | || |||||||| |||||||| Sbjct 402192 TGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| ||||| || || | |||||||||||| ||||| |||||||| || || || ||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | |||||||||| ||||| |||||||| || || || ||||| Sbjct 402887 AGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGT 402946 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| Sbjct 402947 CAACGTTTTCACGAAGATCTGCAT 402970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||| | |||||||||||| || || || || || || || || ||||| Sbjct 405842 TTACCAGCGAAAATGAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGTATTTTC 405901 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | ||||| || || || ||||||||||| || Sbjct 405902 GCCTTAACGTTCTCGATTGTGTCCGAAGCCTCCACTTCAAGTGTGATGGTTTTACCAGTC 405961 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| ||||| Sbjct 405962 AACGTCTTAACGAAAATCTGCAT 405984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||||||||| || | |||||| || || || || ||||| || || |||||||| Sbjct 407798 TGCTTGCCTGCAAAGATGAGACGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATC 407857 Query 134628 TTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || |||| || | |||| || || || | ||||| |||||||| || || || || Sbjct 407858 TTAGCCTTGA-CGTTTTCAATCGTATCCGATGCCTCCACTTCGAGAGTGATCGTCTTGCC 407916 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||| |||||||| Sbjct 407917 AGTGAGAGTCTTCACGAAGATTTGCAT 407943 >seq2815 Length=71442 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||| ||||||||||| ||||| |||||||| |||||||| || | Sbjct 59290 CCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCGCT 59231 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||| |||| || || || || || || ||||||||||| | Sbjct 59230 TTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59171 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 59170 GTCTTCACGAATATCTGCAT 59151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || ||||||| |||||||| ||||| ||||| ||||| || || ||||| || | Sbjct 58222 CCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGCT 58163 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||| |||| ||| || || || || || ||||| || |||| Sbjct 58162 TTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAGG 58103 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| Sbjct 58102 GTCTTGACGAAAATTTGCAT 58083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 59726 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 59667 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||| |||| || || || || || || ||||||||||| | Sbjct 59666 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59607 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || || ||||| || |||||| Sbjct 59606 GTCTTCACGAATATCTGCATT 59586 >seq333 Length=310902 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || || | |||||||||||| || || ||||| || || ||||| || || Sbjct 40204 TTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 40145 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||||| |||| |||||| || ||||| || || || || ||| Sbjct 40144 GTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGTT 40085 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||||| |||||||| |||||| Sbjct 40084 AGTGTTTTTACGAAAATCTGCATT 40061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 44590 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44531 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | ||||| |||| || || || || || || ||||||||||| | Sbjct 44530 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44471 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 44470 GTCTTCACGAATATCTGCAT 44451 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 43330 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43271 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || || |||| || || || || || || ||||||||||| | Sbjct 43270 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43211 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 43210 GTCTTCACGAATATCTGCAT 43191 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 43582 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43523 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || || |||| || || || || || || ||||||||||| | Sbjct 43522 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43463 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 43462 GTCTTCACGAATATCTGCAT 43443 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 43834 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43775 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || || |||| || || || || || || ||||||||||| | Sbjct 43774 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43715 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 43714 GTCTTCACGAATATCTGCAT 43695 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 44086 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44027 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || || |||| || || || || || || ||||||||||| | Sbjct 44026 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43967 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 43966 GTCTTCACGAATATCTGCAT 43947 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||| || | || ||||||||||| ||||| ||||| || || ||||| || | Sbjct 44338 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44279 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | || || |||| || || || || || || ||||||||||| | Sbjct 44278 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44219 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| Sbjct 44218 GTCTTCACGAATATCTGCAT 44199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505254001359640