Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq334 98.7 8e-16 seq1429 93.3 4e-14 seq333 82.4 6e-11 >seq334 Length=798041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | || | ||| | ||||| |||||||| || |||||||| Sbjct 402004 GCCCCCGCGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGA 402063 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || | || || |||||||| || ||| |||| || ||||| || || || || Sbjct 402064 CAGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGG 402123 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| ||||| ||||| | || | ||| || | ||||| || Sbjct 402124 GATGCCCTCCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCAC 402183 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || | ||||| || || || || || |||||||||||| Sbjct 402184 TTCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCATA 402232 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| | ||||||||||| ||||| ||||| | || || || || ||| || Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | | || | ||||| | || || ||||| ||||| |||| ||||| || Sbjct 402887 AGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGT 402946 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| ||||| |||||| Sbjct 402947 CAACGTTTTCACGAAGATCTGCATA 402971 >seq1429 Length=437943 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 ||||||| |||| |||||||||||||| || || | |||||| || || || ||| Sbjct 418750 ACCGGCGAAAATTAGACGCTGTTGATCGGGTGGGATACCCTCCTTGTCCTGAATTTTGGC 418691 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 || | | |||| | ||| || | || ||||| || || || || | ||||||||||| Sbjct 418690 CTTTACGTTTTCGATAGTATCCGACGCCTCAACCTCAAGTGTGATGGTCTTGCCCGTCAG 418631 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 ||| |||||||| || ||||| Sbjct 418630 AGTCTTCACAAAAATCTGCAT 418610 >seq333 Length=310902 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||||||| ||||||||||||| || || || || | |||||| || || ||||| Sbjct 45045 TTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTTC 44986 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| | |||| | || |||| || || ||||| | ||||| | ||||| || Sbjct 44985 GCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGTG 44926 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||| Sbjct 44925 AGTGTCTTGACAAAGATCTGCAT 44903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424816026156984