Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq485 89.7 6e-13 >seq485 Length=296330 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/189 (72%), Gaps = 10/189 (5%) Strand=Plus/Minus Query 19167 AGACATACGACCTGATGAGCCAGAA-GTTC-TTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||| |||||| ||||| ||||| ||| |||||||||||||| ||||| || ||||| Sbjct 278459 AGACGTACGACTTGATGT--CAGAACGTTGGTTCACGCACGCGACACCGACACTATTCAA 278402 Query 19225 CGCCGGTACGAACAACCCGCAGATG---TCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 | ||||| ||||||||| ||| ||||| | || | ||| |||| || Sbjct 278401 CAGTGGTACATGTCGTCCGCAGATGAGTTCG---TGTTTTTTGCTGACGATGCAGGAGGA 278345 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 |||||| |||||||| | ||| || || ||| |||| || | ||| || ||| | | || Sbjct 278344 CAGCATAGAGGGCATATTCGAAACCCTGAAGAAGTGTGCACTCATTTCGAAGAGTGCTGG 278285 Query 19342 GGGTATCGG 19350 || ||||| Sbjct 278284 CGGCATCGG 278276 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/189 (72%), Gaps = 10/189 (5%) Strand=Plus/Minus Query 19167 AGACATACGACCTGATGAGCCAGAA-GTTC-TTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||| |||||| ||||| ||||| ||| |||||||||||||| ||||| || ||||| Sbjct 280372 AGACGTACGACTTGATGT--CAGAACGTTGGTTCACGCACGCGACACCGACACTATTCAA 280315 Query 19225 CGCCGGTACGAACAACCCGCAGATG---TCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 | ||||| ||||||||| ||| ||||| | || | ||| |||| || Sbjct 280314 CAGTGGTACATGTCGTCCGCAGATGAGTTCG---TGTTTTTTGCTGACGATGCAGGAGGA 280258 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 |||||| |||||||| | ||| || || ||| |||| || | ||| || ||| | | || Sbjct 280257 CAGCATAGAGGGCATATTCGAAACCCTGAAGAAGTGTGCACTCATTTCGAAGAGTGCTGG 280198 Query 19342 GGGTATCGG 19350 || ||||| Sbjct 280197 CGGCATCGG 280189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548368079608080