Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq334 176 5e-39 seq2815 129 7e-25 seq1429 122 1e-22 seq333 120 3e-22 seq1879 111 2e-19 seq8483 93.3 5e-14 seq2909 86.0 7e-12 >seq334 Length=798041 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||||||||||||||| || || || || || || || Sbjct 402231 ATGCAAATCTTCGTTAAGACGCTTACCGGCAAGACGATCACGCTGGAAGTGGAAGCATCC 402172 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| || || |||||||| |||||||| || || ||||||||| Sbjct 402171 GATACTATCGAGAATGTGAAAGCGAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAG 402112 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || || || || ||||||| ||||| || | ||||| || Sbjct 402111 CAGCGACTTATTTTCGCGGGCAAACAGCTTGAGGATGGACGTACTCTGTCGGACTACAAC 402052 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || |||||||| || | ||||||||||| || Sbjct 402051 ATCCAAAAAGAGTCTACCCTTCATCTTGTGCTTCGTCTTCGCGGGGG 402005 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| || ||||| || || |||||||| || ||||| || || ||| || Sbjct 407946 ATCATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACGATCACTCTCGAAGTGGAGGCA 407887 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| |||| ||| | |||||||| ||||| ||||||||||| || || || ||| Sbjct 407886 TCGGATACGATTGAAAACGTCAAGGCTAAGATTCAAGACAAGGAGGGCATCCCACCTGAC 407827 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAAC 27553 || |||||||| || ||||| || ||||||| Sbjct 407826 CAACAGCGTCTCATCTTTGCAGGCAAGCAAC 407796 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | || |||||||| |||||||||||||| ||| || Sbjct 404396 ATGCAGATCTTCGTCAAGACGTTAACTGGCAAGACGATTACTCTTGAGGTGGAGGCATCA 404337 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 404336 GACACAATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAGGGCATTCCTCCAGACCAA 404277 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || || || ||||||| Sbjct 404276 CAACGACTTATCTTCGCTGGTA 404255 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || || ||||| ||| | | Sbjct 405367 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACGATCACGCTGGAGGTGGAGGCCTCT 405308 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||||||||| || ||||| ||||| ||||| ||||| || ||| Sbjct 405307 GACACGATCGAGAATGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCTGATCAG 405248 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||||| || |||||| || Sbjct 405247 CAGCGTCTAATCTTCGCTGGTTAG 405224 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||| | |||||||||||||| ||||| || || ||| | Sbjct 402970 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACTATCACTCTCGAAGTGGAGGCGTCC 402911 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||||||||| ||||||||||| || || || ||||| ||| Sbjct 402910 GACACCATTGAGAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATCCCGCCAGATCAG 402851 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 |||||||| || || || ||||| Sbjct 402850 CAGCGTCTCATCTTCGCAGGTAA 402828 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || ||||| ||||| || |||||||| || ||| || Sbjct 404909 AATGCAGATCTTTGTCAAGACCCTCACCGGAAAGACGATAACTCTTGAAGTGGAGGCATC 404850 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | || |||| || || || || |||||||| || || || || || || Sbjct 404849 GGATACGATCGAGAACGTGAAAGCGAAGATACAAGACAAGGAAGGCATACCGCCTGATCA 404790 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || || ||||||||| Sbjct 404789 ACAGCGACTTATCTTCGCTGGTAAG 404765 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||| | || || || || || || ||||| || ||| | Sbjct 405984 ATGCAGATTTTCGTTAAGACGTTGACTGGTAAAACCATCACACTTGAAGTGGAGGCTTCG 405925 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 405924 GACACAATCGAGAACGTTAAGGCGAAAATACAGGACAAGGAGGGTATTCCACCAGATCAG 405865 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 |||||||| ||||| |||||||| Sbjct 405864 CAGCGTCTCATTTTCGCTGGTAA 405842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| || || || || || || ||||| ||| | | Sbjct 403681 ATGCAGATCTTCGTGAAGACTCTTACGGGTAAAACCATCACGCTCGAGGTGGAGGCTTCT 403622 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || ||||| Sbjct 403621 GACACGATCGAGAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAA 403562 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || || |||||| Sbjct 403561 CAGCGGCTGATCTTCGCTGGT 403541 >seq2815 Length=71442 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || | || || ||| | Sbjct 60036 ATGCAGATCTTTGTCAAGACACTCACCGGCAAGACGATAACGTTGGAAGTCGAGGCGTCG 60095 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || ||||||||||||||||| || || || |||||| Sbjct 60096 GATACAATCGAAAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCTGACCAG 60155 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||||||||| || |||||| Sbjct 60156 CAGCGTCTAATTTTCGCCGGTAAG 60179 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || ||||| || || || || || || || | Sbjct 58083 ATGCAAATTTTCGTCAAGACCCTAACTGGCAAAACGATCACACTGGAAGTCGAAGCGTCG 58142 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || |||||||||||||| ||||| || || |||||| Sbjct 58143 GACACCATCGAAAACGTCAAAGCGAAGATTCAGGACAAGGAAGGAATACCACCCGACCAG 58202 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||| |||||| Sbjct 58203 CAGCGCCTGATTTTCGCTGGT 58223 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 ||||| || || ||||||| |||||| ||| | || || || ||||||||||||||||| Sbjct 58409 GGTAAACAGCTGGAGGATGGTCGTACGCTATCGGATTACAACATCCAAAAGGAATCCACT 58468 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| | || ||||||||||| ||||| Sbjct 58469 CTTCATTTGGTTTTGCGTCTTCGTGGTGG 58497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || || || || ||||| || || | Sbjct 58499 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 58558 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || ||||| ||||||||||| || || || |||||| Sbjct 58559 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 58618 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || |||||||| |||| Sbjct 58619 CAACGACTCATTTTTGCCGGTA 58640 >seq1429 Length=437943 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| || || |||||||| || || |||||||||||| | Sbjct 418607 ATCATGCAGATTTTTGTGAAGACTCTGACGGGCAAGACCATCACACTTGAGGTTGAGGCG 418666 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | ||| | ||||| |||||||||||||||||||| || || || || Sbjct 418667 TCGGATACTATCGAAAACGTAAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCCGAT 418726 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || ||| || Sbjct 418727 CAACAGCGTCTAATTTTCGCCGGTTAG 418753 >seq333 Length=310902 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || | || || ||| | Sbjct 44903 ATGCAGATCTTTGTCAAGACACTCACCGGCAAGACGATAACGTTGGAAGTCGAGGCGTCA 44962 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || ||||| ||||||||||| || || || |||||| Sbjct 44963 GATACAATCGAAAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATCCCACCCGACCAG 45022 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| ||||| || |||||| Sbjct 45023 CAGCGTCTCATTTTCGCCGGTAAG 45046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---G 27459 |||||||| || || || || || || || || ||||| || |||||||| || || | Sbjct 40059 ATAATGCAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCG 40118 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 |||| | | ||| | || |||| | || || || ||||||||||| || || || Sbjct 40119 TCAG---ACACCATCGAGAACGTGAAAACCAAGATCCAAGACAAGGAGGGCATCCCACCG 40175 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || || |||||| Sbjct 40176 GATCAGCAGCGTCTAATCTTCGCCGGTAAG 40205 >seq1879 Length=657420 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || || ||||| ||| | Sbjct 526614 ATGCAGATTTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTGGAGGCCTCG 526555 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||||||||| |||||||| ||||| |||||||| |||||| Sbjct 526554 GATACGATTGAAAATGTGAAGGCTAAAATACAGGACAAAGAGGGCATTCCTCCCGACCAG 526495 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || | || ||||| ||| || Sbjct 526494 CAACGCTTGATCTTTGCCGGTTAG 526471 >seq8483 Length=232 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 ||||| || || ||||||| |||||| ||| | || || || ||||||||||||||||| Sbjct 232 GGTAAACAGCTGGAGGATGGTCGTACGCTATCGGATTACAACATCCAAAAGGAATCCACT 173 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| | || ||||||||||| ||||| Sbjct 172 CTTCATTTGGTTTTGCGTCTTCGTGGTGG 144 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || || || || ||||| || || | Sbjct 142 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 83 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || ||||| ||||||||||| || || || |||||| Sbjct 82 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 23 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || |||||||| |||| Sbjct 22 CAACGACTCATTTTTGCCGGTA 1 >seq2909 Length=19253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 60975 CGGTTCCATAGTATAACGGTTAGTACACAGGACTCTGAATCCTGTAATGGGAGTTCGATT 61034 ||||||||| || || |||||||||| |||||||||||| |||| | |||||||| | | Sbjct 12601 CGGTTCCATGGTGTAGCGGTTAGTACTCAGGACTCTGAACCCTGCGACGGGAGTTCAAAT 12660 Query 61035 CTCCCTGGAACCTTCCTCT 61053 |||||||| ||| |||||| Sbjct 12661 CTCCCTGGGACC-TCCTCT 12678 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60975 CGGTTCCATAGTATAACGGTTAGTACACAGGACTCTGAATCCTGTAATGGGAGTTCGATT 61034 ||||||||| || || ||||||| || ||||||||||||||||| | |||||||| | | Sbjct 10205 CGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACGGGAGTTCAAAT 10264 Query 61035 CTCCCTGGAACCT 61047 |||||||| |||| Sbjct 10265 CTCCCTGGGACCT 10277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570147455189840