Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq333 118 9e-22 seq334 116 3e-21 seq1429 105 6e-18 seq2815 104 2e-17 >seq333 Length=310902 Score = 118 bits (130), Expect = 9e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || || ||| | || ||||||||||||||| |||| Sbjct 40062 ATGCAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCGTCA 40121 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || || |||||||| || ||||| ||||| ||||| Sbjct 40122 GACACCATCGAGAACGTGAAAACCAAGATCCAAGACAAGGAGGGCATCCCACCGGATCAG 40181 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||| |||| | |||||| || Sbjct 40182 CAGCGTCTAATCTTCGCCGGTAA 40204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 44451 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44510 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 44511 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44570 Query 27108 CAGCG 27112 || || Sbjct 44571 CAACG 44575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || | ||||| || |||| Sbjct 44902 CATGCAGATCTTTGTCAAGACACTCACCGGCAAGACGATAACGTTGGAAGTCGAGGCGTC 44961 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || || ||||||||||| || || || |||||||| || Sbjct 44962 AGATACAATCGAAAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATCCCACCCGACCA 45021 Query 27107 ACAGCGTTTAATATACGCCGGCAA 27130 |||||| | || | |||||| || Sbjct 45022 GCAGCGTCTCATTTTCGCCGGTAA 45045 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 43191 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43250 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 43251 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43310 Query 27108 CAGCG 27112 || || Sbjct 43311 CAACG 43315 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 43443 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43502 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 43503 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43562 Query 27108 CAGCG 27112 || || Sbjct 43563 CAACG 43567 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 43695 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43754 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 43755 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43814 Query 27108 CAGCG 27112 || || Sbjct 43815 CAACG 43819 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 43947 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44006 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 44007 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44066 Query 27108 CAGCG 27112 || || Sbjct 44067 CAACG 44071 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 44199 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44258 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 44259 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44318 Query 27108 CAGCG 27112 || || Sbjct 44319 CAACG 44323 >seq334 Length=798041 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||||||||| |||| ||||| |||||||| ||||| Sbjct 402970 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACTATCACTCTCGAAGTGGAGGCGTCC 402911 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| || ||||| |||||||| || || ||||| Sbjct 402910 GACACCATTGAGAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATCCCGCCAGATCAG 402851 Query 27108 CAGCGTTTAATATACGCCGGCAAA 27131 |||||| | || | ||| || ||| Sbjct 402850 CAGCGTCTCATCTTCGCAGGTAAA 402827 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | || |||||||||||||| | || Sbjct 404908 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAGACGATAACTCTTGAAGTGGAGGCATCG 404849 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || ||| || || |||||||| ||||||||||| || |||||| Sbjct 404848 GATACGATCGAGAACGTGAAAGCGAAGATACAAGACAAGGAAGGCATACCGCCTGATCAA 404789 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 ||||| | || | ||| || || Sbjct 404788 CAGCGACTTATCTTCGCTGGTAA 404766 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||| || |||||| | || ||||| |||||||| | || Sbjct 407944 CATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACGATCACTCTCGAAGTGGAGGCATC 407885 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | ||||| || ||||||||||| || ||||| ||||| || || Sbjct 407884 GGATACGATTGAAAACGTCAAGGCTAAGATTCAAGACAAGGAGGGCATCCCACCTGACCA 407825 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||||| | || | || ||||| ||| Sbjct 407824 ACAGCGTCTCATCTTTGCAGGCAAGCAA 407797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | || |||||| | ||||||||||| ||||| | || Sbjct 404396 ATGCAGATCTTCGTCAAGACGTTAACTGGCAAGACGATTACTCTTGAGGTGGAGGCATCA 404337 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 404336 GACACAATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAGGGCATTCCTCCAGACCAA 404277 Query 27108 CAGCG 27112 || || Sbjct 404276 CAACG 404272 >seq1429 Length=437943 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || |||||||| |||||| | || || ||||| || || |||| Sbjct 418609 CATGCAGATTTTTGTGAAGACTCTGACGGGCAAGACCATCACACTTGAGGTTGAGGCGTC 418668 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || |||||||| ||||| || || || ||||||||||| Sbjct 418669 GGATACTATCGAAAACGTAAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCCGATCA 418728 Query 27107 ACAGCGTTTAATATACGCCGG 27127 ||||||| |||| | |||||| Sbjct 418729 ACAGCGTCTAATTTTCGCCGG 418749 >seq2815 Length=71442 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 59151 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59210 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | |||||| || ||||||||||||||||| |||||||||||||| Sbjct 59211 GACACGATCGAAAATGTCAAAGCGAAGATTCAAGACAAAGAAGGAATACCACCCGATCAG 59270 Query 27108 CAGCGTTTAATATACGCCGG 27127 || ||| | || | ||||| Sbjct 59271 CAACGTCTTATTTTTGCCGG 59290 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || ||||| || | || || || ||||| || |||| Sbjct 59587 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59646 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 59647 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 59706 Query 27108 CAGCG 27112 || || Sbjct 59707 CAACG 59711 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || || || ||||| ||| |||| Sbjct 58083 ATGCAAATTTTCGTCAAGACCCTAACTGGCAAAACGATCACACTGGAAGTCGAAGCGTCG 58142 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||| ||||| ||||| ||||||||||| || Sbjct 58143 GACACCATCGAAAACGTCAAAGCGAAGATTCAGGACAAGGAAGGAATACCACCCGACCAG 58202 Query 27108 CAGCG 27112 ||||| Sbjct 58203 CAGCG 58207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434794138376640