Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_029024.1 Length=56505 Score E Sequences producing significant alignments: (Bits) Value seq3162 444 2e-120 seq616 120 1e-22 >seq3162 Length=12458 Score = 444 bits (492), Expect = 2e-120 Identities = 877/1298 (68%), Gaps = 40/1298 (3%) Strand=Plus/Minus Query 29192 CCGTTGCCAAAACCTTATAAAAATCTAAAAAGTTTGTTTATTTCCCTGTTCTACGTGTCC 29251 |||||||||||| |||||| ||||| ||| ||||||| |||||||||||||| ||| Sbjct 6275 CCGTTGCCAAAAATCTATAAATATCTATAAACCTTGTTTAATTCCCTGTTCTACGAGTCA 6216 Query 29252 GATTTGGCCAA------------AGCTACTTTCGTTTGATATAACACTCCGAGGGCGTAA 29299 ||||| | || | |||||||| |||| |||||| |||||||||||||| Sbjct 6215 GATTTTGAAAACTATAAATAGTAATCTACTTTCCTTTGGTATAACTCTCCGAGGGCGTAA 6156 Query 29300 ATTCGGATACAACGAATCCTACATATTAGCAATAACGTTTAGGTGTTAATTTGCTAATTG 29359 |||||||||||||| ||||||||||| |||| || | | | ||| || | |||||||| Sbjct 6155 ATTCGGATACAACGCATCCTACATATCAGCATTATCTTCTTAGTGATATTATGCTAATTT 6096 Query 29360 ATAATATGATAAGTTGATAGATGCATTTAAATCCCTATCCATTACAAGACCGCAATCACA 29419 ||| | ||| | || ||| ||| |||||||| ||||| || ||| || || ||| Sbjct 6095 ATATTTTGAAAGATTAATACTTGCGTTTAAATCTCTATCAATATTAAGTCCACAGCTACA 6036 Query 29420 GCGATATACTCGGTCAGATAACTTTAGGTCTTTCTTAACGCTTCCACAACATGAACACA- 29478 ||| |||| || | |||| ||||| ||||| ||||||| ||| ||| Sbjct 6035 TTTATAAACTCTATCTTTAAGTTTTAAATCTTTTTTAACCTTTCCACAT--TGACTACAA 5978 Query 29479 -TTTTAGAAGATGGATACCATCTATCAGCTTCAATGAACTCAATACCA-TATTTTTCACA 29536 | || || |||||||| ||||||| ||| | | |||||||| || || ||| ||| Sbjct 5977 GTCTTTGATGATGGATAAAATCTATCTGCTACTACTAACTCAATTCCTCTAAATTT-ACA 5919 Query 29537 CTTATATTTCATTTGTCGTTTAAACTCATGAAGTTTTTGATTAGCAAACGCTTTAGATAA 29596 |||||||| | ||||| |||||| |||| || ||| || | || | |||||| Sbjct 5918 CTTATATTGAAGTTGTCTTTTAAATTCATAAAAACCTTGTTTTCTTATGGCATCAGATAA 5859 Query 29597 GTGTTTATTCTTCATCATCCCTTTAATATTTAAAGTTTCCATTACAATTCGATATGGTTT 29656 |||||||| |||||||| ||||||| ||||||| ||| ||||||| || ||||| || Sbjct 5858 ATGTTTATTTTTCATCATTCCTTTAACATTTAAATCTTCTATTACAACTCTGTATGGCTT 5799 Query 29657 GGTTTTCACGATATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTGATAATCT 29716 ||||||||| ||| |||| ||| |||||||| ||| |||| || || | ||||| Sbjct 5798 GGTTTTCACTATACTTGTTGTACTTTCATGAAGATAGTTATTTCTAATGTTAGCCAATCT 5739 Query 29717 TCTATGCAAGTGTTGTATCTCATTTTCGATTTTTATAATGTTGCTCGTTTTGACGAAACG 29776 |||||| | |||||||| ||||| | |||||| || || | |||||||| | || Sbjct 5738 TCTATGGATTTGTTGTATACACTTTTCAAGTTTTATTATATTTTTAGTTTTGAC-ATAC- 5681 Query 29777 GTTCCCCTCCTTATTCATTTTGT----ATTTACGAGAAACTTGACGTTGCAACCGACGAA 29832 ||| ||||| || ||||| | |||| | | ||||| | ||| | | | Sbjct 5680 --TCCTTTCCTTTTTTATTTTTTTCATATTTTCTACTCACTTGTCTTTGTAGTCTTTTTA 5623 Query 29833 GACGTTTCTCTACTTCTCTTACTTCATTTGTTTTGTTGATGTTTTCAAACACTTGACCAC 29892 | || || | || || ||| ||| |||| || || ||| ||| ||| |||| Sbjct 5622 ATCTCTTTTCAATTTTCCTAACTACATAACTTTTATTTATATTTCTAAATACTGTACCAT 5563 Query 29893 CTGAACATACTGCTAGCTCTTTTACGCCGACATCAATCCCTAGCGAAACATCTGTTAATT 29952 | || |||| ||||| ||| | || | || || |||| || ||||||||||| | Sbjct 5562 CAGAGCATATTGCTAAAATTTTCAATCCTAAGTCTATTCCTAATGATACATCTGTTAAAT 5503 Query 29953 CCGTTGTTTG--TGGTTCTTCTTCAATTCCTACAGACAGATACCAGTACTTACCATCAAA 30010 | || ||| | |||||| ||| || ||||| || | |||||| ||||| |||| | Sbjct 5502 C--TTCTTTAATTTGTTCTTTTTCTATACCTACCGAGATATACCAATACTTGTTATCATA 5445 Query 30011 ACTGATTCTTGGATTGTAGTACTTTACGTCCATTGGTATTCGTTCAGATATTTTCATCCA 30070 || | ||||| ||||| || | || |||| | ||||| |||| ||||| Sbjct 5444 TGATATACGAGGATTACTATACTTAACTCCAATAGGTAGTTGTTCATTAGTTTTTATCCA 5385 Query 30071 ACCAACTTTTTCAAT-----CAAGGCTTTATTATTNNNNNNNNNNNNNNNNNNNNNNNNN 30125 |||||| |||||||| | | || | || || Sbjct 5384 ACCAACCTTTTCAATATTAACTAATCTATTTTCTT--TAACTTTTAACTTTACATTATCA 5327 Query 30126 NNNTAAAAAGACGGTTTTGACTTCTTTCTGTTTTTAAACTTCGGTCTCTTTGCTTGTTTC 30185 || || || ||| ||| ||||| | |||| ||| | | || | | Sbjct 5326 TTATAGAAGGATTTTTTACTCTTTTTTCTACTCTTAAGTCGTGGTTTATCTGATAATCCA 5267 Query 30186 GCAAAGAATTTTTTATACGCATCACAAGCATCTTTAATTGCTTGTTTTGTGATATTATTG 30245 |||||| ||||||| |||| |||||||||||| | |||||||| | | |||||| Sbjct 5266 TTGAAGAATCTTTTATAAGCATTACAAGCATCTTTTACAGCTTGTTTAGCAACATTATTA 5207 Query 30246 GACACCTCATACAACCAAACATATTCTTCAGTTTGTTTTAAAACGGTCAATTCTTTACGA 30305 || || |||| ||||| || | |||| ||| |||| ||| ||||| || | Sbjct 5206 GATACTTCATTTAACCA---ATTTAATTCATTTTTCTTTAGCTTGGTTAATTCCTTTCTC 5150 Query 30306 AGAATGCCATCAGATATGAATTTATTTCCGTTCTTGTGGTTTTCTTCTTGCTTTCCCAAT 30365 | ||| |||||| |||| ||||| || || | | ||||||||||| ||| | | Sbjct 5149 AAAATTCCATCATATATAAATTTTCCACCATTTTCATAATTTTCTTCTTGTTTTGAAAGT 5090 Query 30366 GTCCAGTTATATGCCCATCTCGCTGTTCCTGCTGATTTCCAAAGTTGTCGTTCCTGTTCT 30425 ||||| |||||| | || || ||||| |||| | |||||||| | || ||| | Sbjct 5089 GTCCAATTATATATAAACCTTGCAGTTCCAACTGACTGCCAAAGTTTTTTCTCTTGTATT 5030 Query 30426 TTAGTTGGTTTTAACCGAACtttttttGCTAGTATCAT 30463 | | |||| | || | ||||||||| | ||||||||| Sbjct 5029 TCACTTGGATACAATCTAACTTTTTTCGATAGTATCAT 4992 >seq616 Length=43856 Score = 120 bits (132), Expect = 1e-22 Identities = 340/510 (67%), Gaps = 22/510 (4%) Strand=Plus/Minus Query 29265 CTACTTTCGTTTGATATAACACTCCGAGGGCGTAAATTCGGATACAACGAATC-CTACAT 29323 ||||| | |||| ||||| || ||| | ||| |||||||| | | ||| |||||| Sbjct 37950 CTACTCTAGTTT-ATATAGCAGTCCAAAGGCTTAAATTCG-ACCTAGTCAATGTCTACAT 37893 Query 29324 ATTAGCAATAACGTTT-AGGTG--TTAATTTGCTAATTGATAATATGATAAGTTGATAGA 29380 ||||||| | | ||| | || || | |||||||| ||||| || ||| || ||| Sbjct 37892 ATTAGCATAATCTTTTTATTTGATTTTCTATGCTAATTTATAATTTGCTAAATTAATACT 37833 Query 29381 TGCATTTAAATCCCTATCCATTACAAGACCGCAATC---ACAGCGATATAC-TCGGTCAG 29436 ||||||| ||| |||| |||| |||| || | | | | ||| | |||| Sbjct 37832 TGCATTTTTATCTCTATGAATTATAAGATTACACTTTGGATTGGTACATATATAGGTCCT 37773 Query 29437 ATAACTTTAGGTCTT-------TCTTAACGCTTCCACAACATGAACACATTTTAGAAGAT 29489 || |||| ||||| | || | || |||||| ||||| | |||| | | Sbjct 37772 AT--CTTTTAGTCTTAAATCCTTTTTGATAGTTTTACAACAAGAACAAAGTTTACTACTT 37715 Query 29490 GGATACCATCTATCAGCTTCAATGAACTCAATACCATATTTTTCACACTTATATTTCATT 29549 ||||| ||||||| |||| || || ||||| |||| | | | ||||||| || Sbjct 37714 GGATAAAATCTATCTGCTTTAACAAATTCAATTCCATTCCACTTAAATTTATATT-CAAG 37656 Query 29550 TGTCGTT-TAAACTCATGAAGTTTTTGATTAGCAAACGCTTTAGATAAGTGTTTATTCTT 29608 | | | | |||| | || || ||| | | || |||||||||||| |||||||| || Sbjct 37655 TATAGCTATAAATTTATTAAAACATTGTTCTGAAATCGCTTTAGATAAATGTTTATTTTT 37596 Query 29609 CATCATCCCTTTAATATTTAAAGTTTCCATTACAATTCGATATGGTTTGGTTTTCACGAT 29668 ||||| ||||| | ||||||| ||| | ||| | || | | || || |||||||| || Sbjct 37595 TATCATTCCTTTTACATTTAAATCTTCAACTACTACTCTACAAGGCTTAGTTTTCACTAT 37536 Query 29669 ATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTGATAATCTTCTATGCAAGTG 29728 || | |||||||| | || || ||| |||| || ||| || | || | Sbjct 37535 TGTATTAATAGTTTGATGTATGTGATTTAATCTAATATCTG-CAATTTTTTTTGAACAAT 37477 Query 29729 TTGTATCTCATTTTCGATTTTTATAATGTT 29758 || ||||| ||||| |||||||| || || Sbjct 37476 TTTTATCTGTTTTTCAATTTTTATGATATT 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180645354683678