Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq334 156 1e-32 seq333 118 2e-21 seq2815 114 3e-20 seq1429 100 7e-16 >seq334 Length=798041 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||||| ||||| || ||||||||||||||||| || |||| || || Sbjct 402011 CGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTA 402070 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || ||||| ||||| ||||| ||||| || || ||||| || || | || Sbjct 402071 CGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCC 402130 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||| ||||| |||||| || ||||| || || || ||| || || || Sbjct 402131 TCCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGC 402190 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || || || ||||| || || | ||||| Sbjct 402191 GTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || || || || |||||||| | ||||||||| ||||||||||| Sbjct 405228 CCAGCGAAGATTAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC 405287 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||| ||||||||| || ||||| || ||||||||||| |||||||| Sbjct 405288 TTCACATTCTCGATCGTGTCAGAGGCCTCCACCTCCAGCGTGATCGTCTTACCCGTGAGG 405347 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 405348 GTCTTGACAAAGATCTGCAT 405367 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || || ||||||||||| || | || |||||||||||||||||| Sbjct 403542 CCAGCGAAGATCAGCCGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCC 403601 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| |||||||| || |||||||| ||||| || || ||||| ||| Sbjct 403602 TTAACGTTCTCGATCGTGTCAGAAGCCTCCACCTCGAGCGTGATGGTTTTACCCGTAAGA 403661 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 403662 GTCTTCACGAAGATCTGCAT 403681 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||||||||| || ||||| ||||| || | ||||||||||| || ||||| Sbjct 404765 CTTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTT 404824 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||||||| ||||| || || || || || || ||||| ||||||||||| || Sbjct 404825 CGCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGT 404884 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| ||||| | ||||||| Sbjct 404885 GAGGGTCTTGACAAAGATCTGCATT 404909 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||||||||| ||||| || || ||||||||||| || | || |||||||| || ||| Sbjct 407798 TGCTTGCCTGCAAAGATGAGACGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAATC 407857 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || |||||||| || || || || || || ||||||||||||||||| || Sbjct 407858 TTAGCCTTGACGTTTTCAATCGTATCCGATGCCTCCACTTCGAGAGTGATCGTCTTGCCA 407917 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || || | ||||| Sbjct 407918 GTGAGAGTCTTCACGAAGATTTGCAT 407943 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||||||||| ||||||||||| ||||||| || || ||||| ||||| || Sbjct 404257 CCAGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCCTCTTTGTCTTGGATTTTCGCC 404316 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || || ||||| || || ||||| ||||| |||||||| || || | Sbjct 404317 TTGACGTTCTCAATTGTGTCTGATGCCTCCACCTCAAGAGTAATCGTCTTGCCAGTTAAC 404376 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 404377 GTCTTGACGAAGATCTGCAT 404396 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||||||||| || || || || || || || | ||||||||||||||||| || Sbjct 402828 TTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTTA 402887 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || |||||||| || || || ||||||||||| ||||| || || Sbjct 402888 GCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGTC 402947 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | || || || || | |||||| Sbjct 402948 AACGTTTTCACGAAGATCTGCAT 402970 >seq333 Length=310902 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || || || || || || || | || |||||||| |||||||| Sbjct 40205 CTTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTT 40146 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||||||| ||||||||||| || ||| || || ||||||||||||||||| || Sbjct 40145 GGTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGT 40086 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || | ||||||| Sbjct 40085 TAGTGTTTTTACGAAAATCTGCATT 40061 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 44590 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44531 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||||||||||||||| || || || || || |||||||| || || ||||| Sbjct 44530 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44471 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 44470 GTCTTCACGAATATCTGCAT 44451 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 43330 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43271 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||| || || || || || || |||||||| || || ||||| Sbjct 43270 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43211 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 43210 GTCTTCACGAATATCTGCAT 43191 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 43582 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43523 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||| || || || || || || |||||||| || || ||||| Sbjct 43522 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43463 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 43462 GTCTTCACGAATATCTGCAT 43443 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 43834 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43775 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||| || || || || || || |||||||| || || ||||| Sbjct 43774 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43715 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 43714 GTCTTCACGAATATCTGCAT 43695 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 44086 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44027 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||| || || || || || || |||||||| || || ||||| Sbjct 44026 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43967 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 43966 GTCTTCACGAATATCTGCAT 43947 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 44338 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44279 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||| || || || || || || |||||||| || || ||||| Sbjct 44278 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44219 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 44218 GTCTTCACGAATATCTGCAT 44199 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || || || || ||||| || || | || |||||||| || ||||| Sbjct 45046 CTTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTT 44987 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||||||||| || || || || || || | || |||||||| || || Sbjct 44986 CGCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGT 44927 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| | |||||| Sbjct 44926 GAGTGTCTTGACAAAGATCTGCAT 44903 >seq2815 Length=71442 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || ||||| || || || || | ||||||||||||||| ||||| | Sbjct 59726 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 59667 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||||||||||||||| || || || || || |||||||| || || ||||| Sbjct 59666 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59607 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | ||||||| Sbjct 59606 GTCTTCACGAATATCTGCATT 59586 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || ||||| || ||||| || || | ||||||||||||||| ||||| | Sbjct 58222 CCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGCT 58163 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||||||||||||||| || ||| || || || |||||||| || || || || Sbjct 58162 TTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAGG 58103 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 58102 GTCTTGACGAAAATTTGCAT 58083 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || || || || |||||||| || | || ||||||||||| ||||| Sbjct 60179 CTTACCGGCGAAAATTAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATCTT 60120 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||||||||| || || || || || || | || |||||||| || || Sbjct 60119 CGCCTTCACGTTTTCGATTGTATCCGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGT 60060 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| | |||||| Sbjct 60059 GAGTGTCTTGACAAAGATCTGCAT 60036 >seq1429 Length=437943 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || || || ||||| || || || | || ||||||||||| || || Sbjct 418749 CCGGCGAAAATTAGACGCTGTTGATCGGGTGGGATACCCTCCTTGTCCTGAATTTTGGCC 418690 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||||||||| || || || |||||||| || ||||| ||||| ||||| ||| Sbjct 418689 TTTACGTTTTCGATAGTATCCGACGCCTCAACCTCAAGTGTGATGGTCTTGCCCGTCAGA 418630 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 418629 GTCTTCACAAAAATCTGCAT 418610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158812536178805