Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2815 91.5 1e-13 seq334 89.7 3e-13 seq1429 86.0 4e-12 seq333 84.2 1e-11 seq1879 82.4 5e-11 >seq2815 Length=71442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || | || Sbjct 59151 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59210 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||||||||| |||| || ||||| Sbjct 59211 GACACGATCGAAAATGTCAAAGCGAAGATTCAAGACAAAGAAGGAATACCACCCGATCAG 59270 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || ||| | || |||||||| Sbjct 59271 CAACGTCTTATTTTTGCCGG 59290 >seq334 Length=798041 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || || || || || |||||||| || ||||| || | | Sbjct 402231 ATGCAAATCTTCGTTAAGACGCTTACCGGCAAGACGATCACGCTGGAAGTGGAAGCATCC 402172 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | ||| | || | || || || || || | || ||||| || Sbjct 402171 GATACTATCGAGAATGTGAAAGCGAAGA-TTCAGGATAAGGAGGGCATCCCACCAGACCA 402113 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || |||||||| || || || | ||| ||| | || ||||| Sbjct 402112 GCAGCGACTTATTTTCGCGGGCAAACAGCTTGAGGATGGACGTACTCTGTCGGACTACAA 402053 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 402052 CATCCAAAAAGAGTCTAC 402035 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || ||||| || || ||||||||||||||||| || | || Sbjct 407943 ATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACGATCACTCTCGAAGTGGAGGCATCG 407884 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || ||| ||||| || || | || || || ||| Sbjct 407883 GATACGATTGAAAACGTCAAGGCTAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAA 407824 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAAC 23758 |||||| | || ||||| ||||| |||| Sbjct 407823 CAGCGTCTCATCTTTGCAGGCAAGCAAC 407796 >seq1429 Length=437943 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || ||||| || || ||||| || || ||||| | || Sbjct 418610 ATGCAGATTTTTGTGAAGACTCTGACGGGCAAGACCATCACACTTGAGGTTGAGGCGTCG 418669 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| |||| |||||| ||||| || ||| | || || |||||| Sbjct 418670 GATACTATCGAAAACGTAAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCCGATCAA 418729 Query 23731 CAGCGTTTAATATTTGCCGG 23750 |||||| |||| || ||||| Sbjct 418730 CAGCGTCTAATTTTCGCCGG 418749 >seq333 Length=310902 Score = 84.2 bits (92), Expect = 1e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| || || ||||| ||||||||||| ||||| || | | Sbjct 40061 AATGCAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCGTC 40120 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || || | ||||| || || ||||| || || | || || |||| Sbjct 40121 AGACACCATCGAGAACGTGAAAAC-CAAGATCCAAGACAAGGAGGGCATCCCACCGGATC 40179 Query 23729 AACAGCGTTTAATATTTGCCGGCAA 23753 | |||||| |||| || ||||| || Sbjct 40180 AGCAGCGTCTAATCTTCGCCGGTAA 40204 >seq1879 Length=657420 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || ||||| || ||||| || || || Sbjct 526617 AAGATGCAGATTTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTGGAGGCC 526558 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||||| | || ||||| |||||||| || | || || || Sbjct 526557 TCGGATACGATTGAAAATGTGAAGGCTAAAATACAGGACAAAGAGGGCATTCCTCCCGAC 526498 Query 23728 CAACAGCGTTTAATATTTGCCGG 23750 || || || || || |||||||| Sbjct 526497 CAGCAACGCTTGATCTTTGCCGG 526475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337915440771356