Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq334 131 4e-25 seq333 89.7 1e-12 seq2815 87.8 4e-12 >seq334 Length=798041 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| ||||||||||||||||||||||| || | | ||| | ||||| Sbjct 402020 AGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCC 402079 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| ||||| | ||||||||| | | ||| || ||||| || Sbjct 402080 TCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC 402139 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| ||| |||| | | || || || ||||| || || || || Sbjct 402140 TGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTC 402199 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| ||||| Sbjct 402200 TTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| |||| ||| ||||| | | ||| || ||||| || || || ||| Sbjct 403542 CCAGCGAAGATCAGCCGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCC 403601 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || |||| | |||| ||| ||| || || || || || ||||| ||||| ||| Sbjct 403602 TTAACGTTCTCGATCGTGTCAGAAGCCTCCACCTCGAGCGTGATGGTTTTACCCGTAAGA 403661 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 403662 GTCTTCACGAAGATCTGCAT 403681 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||||||||| | ||| || || | || || |||||||| ||||| || || Sbjct 404766 TTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTTC 404825 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || |||| | | || || ||| ||||||||||| || || || || ||| Sbjct 404826 GCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGTG 404885 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || |||| ||||||| Sbjct 404886 AGGGTCTTGACAAAGATCTGCATT 404909 >seq333 Length=310902 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || | |||||| |||| | ||| || ||||| ||||| || || Sbjct 40204 TTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 40145 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || |||| | | ||||||| || ||||||||||| || || || || || Sbjct 40144 GTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGTT 40085 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| | ||||||| Sbjct 40084 AGTGTTTTTACGAAAATCTGCATT 40061 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || ||||| |||| ||||| || | | ||||||||||| || ||||| || | Sbjct 44590 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44531 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| | || | | |||| || ||| ||||| || || || ||||| || ||||| Sbjct 44530 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44471 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||| | |||||| Sbjct 44470 GTCTTCACGAATATCTGCAT 44451 >seq2815 Length=71442 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || ||||| |||| ||||| || | | ||||||||||| || ||||| || | Sbjct 59726 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 59667 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| | || | | |||| || ||| ||||| || || || ||||| || ||||| Sbjct 59666 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59607 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||||||||| | ||||||| Sbjct 59606 GTCTTCACGAATATCTGCATT 59586 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| || ||||| | ||||| || | | |||||||| || |||||||| || | Sbjct 59290 CCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCGCT 59231 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| | || | |||| || ||| ||||| || || || ||||| || ||||| Sbjct 59230 TTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59171 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||| | |||||| Sbjct 59170 GTCTTCACGAATATCTGCAT 59151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153482897449047