Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq334 107 1e-18 seq1879 82.4 5e-11 >seq334 Length=798041 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || ||||| || ||| |||||||||||||| || | || || | || || Sbjct 402022 CACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTC 402081 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| || || || || || | |||||||| |||| || | || ||||| ||| Sbjct 402082 AAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTG 402141 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | ||| | || || |||| | |||||| |||| ||| ||||||| Sbjct 402142 AATCTTC-GCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTCT 402200 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| |||||||||||||| Sbjct 402201 TGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | |||||||||||| | ||| | |||||||| ||| ||||| | Sbjct 405228 CCAGCGAAGATTAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC 405287 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| | | || ||||| | || |||||||||| ||| |||||||| ||||||||| Sbjct 405288 TTCACATTCTCGATCGTGTCAGAGGCCTCCACCTCCAGCGTGATCGTCTTACCCGTGAGG 405347 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| ||||| Sbjct 405348 GTCTTGACAAAGATCTGCAT 405367 >seq1879 Length=657420 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||| || ||||| || | ||| | || || || ||| ||| || | Sbjct 526475 CCGGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGTATTTTAGCC 526534 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || || || | || |||||||| | || |||||||| ||||| ||| Sbjct 526535 TTCACATTTTCAATCGTATCCGAGGCCTCCACCTCGAGGGTTATCGTCTTACCCGTTAGG 526594 Query 44318 GTCTTCACGAAGATTTGCAT 44337 || || ||||| || ||||| Sbjct 526595 GTTTTGACGAAAATCTGCAT 526614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359890117586769