Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq334 165 2e-35 seq333 136 1e-26 seq2815 125 2e-23 seq8483 113 1e-19 seq1879 104 6e-17 seq1429 86.0 2e-11 >seq334 Length=798041 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || |||||||| || || |||||| || || Sbjct 402228 CAAATCTTCGTTAAGACGCTTACCGGCAAGACGATCACGCTGGAAGTGGAAGCATCCGAT 402169 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||||||||| || || || ||||| || |||||||| Sbjct 402168 ACTATCGAGAATGTGAAAGCGAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAG 402109 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| ||||| || |||||||| || |||||| | ||||| | || || ||| || Sbjct 402108 CGACTTATTTTCGCGGGCAAACAGCTTGAGGATGGACGTACTCTGTCGGACTACAACATC 402049 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || || |||||||| Sbjct 402048 CAAAAAGAGTCTACCCTTCATCTTGT 402023 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 403678 CAGATCTTCGTGAAGACTCTTACGGGTAAAACCATCACGCTCGAGGTGGAGGCTTCTGAC 403619 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||| |||||||| || || ||||| || ||||| || Sbjct 403618 ACGATCGAGAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAACAG 403559 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 403558 CGGCTGATCTTCGCTGG 403542 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || |||||||| || |||||||| ||| ||| Sbjct 405364 CAGATCTTTGTCAAGACCCTCACGGGTAAGACGATCACGCTGGAGGTGGAGGCCTCTGAC 405305 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| ||||| || |||||||||||||| || ||||| Sbjct 405304 ACGATCGAGAATGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCTGATCAGCAG 405245 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 405244 CGTCTAATCTTCGCTGG 405228 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || ||||| || || |||||||| |||||| Sbjct 404393 CAGATCTTCGTCAAGACGTTAACTGGCAAGACGATTACTCTTGAGGTGGAGGCATCAGAC 404334 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || || || |||||||| || || ||||| ||||| ||| Sbjct 404333 ACAATTGAGAACGTCAAGGCGAAAATCCAAGACAAAGAGGGCATTCCTCCAGACCAACAA 404274 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||||||||| || Sbjct 404273 CGACTTATCTTCGCTGG 404257 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || || ||||| ||||| ||||| || ||| Sbjct 402967 CAGATCTTCGTGAAAACGTTGACCGGCAAGACTATCACTCTCGAAGTGGAGGCGTCCGAC 402908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || || || |||||||| ||||| ||||| || || ||||| Sbjct 402907 ACCATTGAGAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATCCCGCCAGATCAGCAG 402848 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 || || |||||||| || ||| Sbjct 402847 CGTCTCATCTTCGCAGGTAAA 402827 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| ||||| ||||| || || || ||||| || || Sbjct 404905 CAGATCTTTGTCAAGACCCTCACCGGAAAGACGATAACTCTTGAAGTGGAGGCATCGGAT 404846 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| ||||| || ||||| ||||| || || || || || || Sbjct 404845 ACGATCGAGAACGTGAAAGCGAAGATACAAGACAAGGAAGGCATACCGCCTGATCAACAG 404786 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||||||||| || || Sbjct 404785 CGACTTATCTTCGCTGGTAA 404766 >seq333 Length=310902 Score = 136 bits (150), Expect = 1e-26 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || |||||||| |||||||| || || |||||| |||||| Sbjct 40065 CAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCGTCAGAC 40124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||||| || ||||| || || ||||| ||||| ||||| Sbjct 40125 ACCATCGAGAACGTGAAAACCAAGATCCAAGACAAGGAGGGCATCCCACCGGATCAGCAG 40184 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || ||||||||||| || Sbjct 40185 CGTCTAATCTTCGCCGGTAA 40204 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || ||| Sbjct 44454 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAC 44513 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 44514 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 44573 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 44574 CGGCTCATCTTTGCAGG 44590 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || || Sbjct 43194 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAT 43253 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 43254 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 43313 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 43314 CGGCTCATCTTTGCAGG 43330 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || || Sbjct 43446 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAT 43505 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 43506 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 43565 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 43566 CGGCTCATCTTTGCAGG 43582 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || || Sbjct 43698 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAT 43757 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 43758 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 43817 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 43818 CGGCTCATCTTTGCAGG 43834 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || || Sbjct 43950 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAT 44009 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 44010 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 44069 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 44070 CGGCTCATCTTTGCAGG 44086 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || || Sbjct 44202 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAT 44261 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 44262 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 44321 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 44322 CGGCTCATCTTTGCAGG 44338 >seq2815 Length=71442 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||||||||| || || || ||| || ||| Sbjct 58086 CAAATTTTCGTCAAGACCCTAACTGGCAAAACGATCACACTGGAAGTCGAAGCGTCGGAC 58145 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || |||||||| Sbjct 58146 ACCATCGAAAACGTCAAAGCGAAGATTCAGGACAAGGAAGGAATACCACCCGACCAGCAG 58205 Query 178044 CGACTTATCTTCGCCGG 178060 || || || ||||| || Sbjct 58206 CGCCTGATTTTCGCTGG 58222 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || ||| Sbjct 59590 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAC 59649 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||||||||||| |||||||| || || || |||||| Sbjct 59650 ACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAGCAA 59709 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 59710 CGGCTCATCTTTGCAGG 59726 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||||||||| || || || || || ||| Sbjct 59154 CAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCGGAC 59213 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| |||||||| |||||||||||||| || || || |||||| Sbjct 59214 ACGATCGAAAATGTCAAAGCGAAGATTCAAGACAAAGAAGGAATACCACCCGATCAGCAA 59273 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || ||||| Sbjct 59274 CGTCTTATTTTTGCCGG 59290 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || ||||||||||| || || || ||| ||| || Sbjct 58502 CAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCCGAT 58561 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||| ||||| || || || || || ||||||||| Sbjct 58562 ACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAGCAA 58621 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || || ||||| Sbjct 58622 CGACTCATTTTTGCCGG 58638 >seq8483 Length=232 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || ||||||||||| || || || ||| ||| || Sbjct 139 CAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCCGAT 80 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||| ||||| || || || || || ||||||||| Sbjct 79 ACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAGCAA 20 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || || ||||| Sbjct 19 CGACTCATTTTTGCCGG 3 >seq1879 Length=657420 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || || || ||||| |||||||||||||| ||| || Sbjct 526611 CAGATTTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTGGAGGCCTCGGAT 526552 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || ||||||||||| || || ||||| ||||||||| Sbjct 526551 ACGATTGAAAATGTGAAGGCTAAAATACAGGACAAAGAGGGCATTCCTCCCGACCAGCAA 526492 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 526491 CGCTTGATCTTTGCCGG 526475 >seq1429 Length=437943 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||||| || || || || ||||| || ||||| || || || Sbjct 418613 CAGATTTTTGTGAAGACTCTGACGGGCAAGACCATCACACTTGAGGTTGAGGCGTCGGAT 418672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || ||||||||||| || || ||||| || || || || Sbjct 418673 ACTATCGAAAACGTAAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCCGATCAACAG 418732 Query 178044 CGACTTATCTTCGCCGG 178060 || || || |||||||| Sbjct 418733 CGTCTAATTTTCGCCGG 418749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203378680923258