Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq45 89.7 1e-12 >seq45 Length=238280 Score = 89.7 bits (98), Expect = 1e-12 Identities = 221/333 (66%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 || || || || |||||||| || ||| | || || | || | | || || ||| Sbjct 34325 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 34384 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||| | ||| ||| ||||||||||| || ||| ||| ||||||| || | Sbjct 34385 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 34444 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || | | || || || ||||||||||| || ||||| ||||| ||||| Sbjct 34445 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 34504 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACT 281981 | ||| || || ||||| ||| | | |||||| |||||| | || ||| Sbjct 34505 GCAAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAACATGTGAACAAAACT 34564 Query 281982 TTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CATA 282040 || ||||| |||||| || |||||||| | || |||||||| || || | ||| Sbjct 34565 TTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCATG 34624 Query 282041 CCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || ||||||||| | || ||||| ||||| Sbjct 34625 TTGC-TGAACAAAATCAACTCTTTGTCGATGAA 34656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057715695020330