Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq22 188 7e-43
>seq22
Length=309055
Score = 188 bits (208), Expect = 7e-43
Identities = 267/373 (72%), Gaps = 7/373 (2%)
Strand=Plus/Minus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || | || || | || || ||||||| || | ||||| ||||| ||
Sbjct 282591 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 282532
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919
|| ||||| || || || || || |||||||| | |||| |||||||| ||| |
Sbjct 282531 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 282475
Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAA 116979
|| | ||| |||| | |||| ||||| |||||||| || |||||||| ||
Sbjct 282474 CCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGAA 282415
Query 116980 AGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCG 117039
| ||||| || ||||| |||||||||||| | | | || | | || |||| ||
Sbjct 282414 GAAAAAGGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACG 282355
Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099
|||| || ||||| || || || ||| | |||||||| ||||| ||||| | || ||
Sbjct 282354 TTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTT 282295
Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159
||| | || || |||||||| |||||||| |||| |||||||||||||| ||||| |
Sbjct 282294 CTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCG 282235
Query 117160 GGACGAGGGTCTG 117172
||||| ||||||
Sbjct 282234 TGACGA-GGTCTG 282223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515167736042160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |