Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq542 105 1e-17 seq351 105 1e-17 seq286 105 1e-17 seq1723 95.1 2e-14 seq50 91.5 2e-13 >seq542 Length=5403 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || |||| | ||| || Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 338 GCAACGTCTGATTTTTGCTGG 358 >seq351 Length=21764 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || |||| | ||| || Sbjct 20740 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 20799 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 20800 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 20859 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 20860 GCAACGTCTGATTTTTGCTGG 20880 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 19895 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19954 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || || || ||||| Sbjct 19955 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 20014 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 20015 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 20044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| || Sbjct 20458 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20517 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 20518 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20577 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| | | || ||||| || || |||| Sbjct 20578 ACAGCGTTTGATATTTGCTGGTAAGTAATT 20607 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| || Sbjct 21588 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 21647 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||| ||||||||||| || || || || ||||| Sbjct 21648 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 21707 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 21708 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 21737 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | ||||| ||||| || || | || |||| | Sbjct 19262 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19321 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 19322 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 19381 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 19382 CAGCGGCTTATTTTTGCTGG 19401 >seq286 Length=43880 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || |||| | ||| || Sbjct 218 AATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 277 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 278 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 337 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 338 GCAACGTCTGATTTTTGCTGG 358 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| || Sbjct 24999 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 25058 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 25059 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 25118 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 25119 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 25148 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 23868 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 23927 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 23928 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 23987 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 23988 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 24017 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | ||||| ||||| || || | || |||| | Sbjct 23235 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 23294 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 23295 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 23354 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 23355 CAGCGGCTTATTTTTGCTGG 23374 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| ||||| || ||||| || || | || | ||| || Sbjct 25278 AATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATC 25337 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | ||| ||| ||||||||||| || || || || || ||||| Sbjct 25338 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 25397 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 25398 ACAGCGTCTGATTTTTGCTGG 25418 >seq1723 Length=770 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| || Sbjct 220 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 279 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 280 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 339 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| | | || ||||| || || |||| Sbjct 340 ACAGCGTTTGATATTTGCTGGTAAGTAATT 369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 502 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 561 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || || || ||||| Sbjct 562 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCA 621 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 |||| | | |||||||| || || || || Sbjct 622 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 651 >seq50 Length=223599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | |||||||| || || ||||||||||| |||| ||||| || Sbjct 2234 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 2175 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 2174 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 2115 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 2114 CAAAGATTAATCTTTGCAGGTAA 2092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||| |||| || ||||| || || | || | || || Sbjct 950 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 891 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| ||||| |||||||||||||| ||||| || ||||||||||| Sbjct 890 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 831 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 830 GCAACGATTGATATTTGCTGG 810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||| |||| || ||||| || || | || | || || Sbjct 1236 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 1177 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | ||| |||||||||||||| ||||| || ||||||||||| Sbjct 1176 TGATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1117 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 1116 GCAACGATTGATATTTGCTGG 1096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755380539388800