Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 2e-19
seq107 105 8e-18
seq20 105 8e-18
seq10 105 8e-18
>seq3
Length=622169
Score = 111 bits (122), Expect = 2e-19
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|| |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 95945 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 95886
Query 60115 ACTCACCACTATACTACCGAGGAT 60138
||||||||||||||||||||||||
Sbjct 95885 ACTCACCACTATACTACCGAGGAT 95862
>seq107
Length=145534
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 71561 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71502
Query 60126 TACTACCGAGGATTGA 60141
|||||||||||| |||
Sbjct 71501 TACTACCGAGGACTGA 71486
>seq20
Length=313988
Score = 105 bits (116), Expect = 8e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104
|||| | ||| || ||| |||| |||| ||||||||||||| |||| ||||||||||
Sbjct 266571 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 266630
Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137
|||||| |||||||||||||||||||||||||
Sbjct 266631 AGGCGGGAATACTCACCACTATACTACCGAGGA 266663
>seq10
Length=390958
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 50791 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 50732
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 50731 TACTACCGAGGAT 50719
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 51488 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 51429
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 51428 TACTACCGAGGAT 51416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571760482569480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |