Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq22 149 6e-31
seq351 95.1 1e-14
seq286 95.1 1e-14
seq3254 86.0 6e-12
seq67 86.0 6e-12
>seq22
Length=309055
Score = 149 bits (164), Expect = 6e-31
Identities = 260/371 (70%), Gaps = 12/371 (3%)
Strand=Plus/Minus
Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
||| || ||||||| |||||| | ||||| || ||||| | | || || || || ||
Sbjct 282591 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 282532
Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856
| | ||||| ||||| || ||||| |||||||| || | ||||| || ||| |
Sbjct 282531 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 282472
Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911
|| | ||| ||| || ||||||||||||||||| || || || ||| |
Sbjct 282471 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 282417
Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970
|| |||||||| ||| | | ||||| | || || | | | || |||
Sbjct 282416 AAGAAAAAGGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 282358
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | |||||||||| || || ||||| || |||||||| |||||||| ||| ||||
Sbjct 282357 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 282298
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090
|| ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 282297 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 282238
Query 58091 GCGCGACGAGG 58101
|| |||||||
Sbjct 282237 TCGTGACGAGG 282227
>seq351
Length=21764
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 21024 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21083
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| || |||| ||| |||||||| | || || || |||
Sbjct 21084 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 21143
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 21144 CAACGTCTGATTTTTGCTGG 21163
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || |||||||| ||||| | || || ||||| ||
Sbjct 20175 ATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 20234
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| |||||||| | || || || |||
Sbjct 20235 GATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 20294
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 20295 CAACGTTTGATTTTTGCTGGTAA 20317
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 21307 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21366
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| || |||| ||| |||||||| | || || || |||
Sbjct 21367 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 21426
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 21427 CAACGTTTGATTTTTGCTGGTAA 21449
>seq286
Length=43880
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || |||||||| ||
Sbjct 24148 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCT 24207
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || |||
Sbjct 24208 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24267
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 24268 CAACGTCTGATTTTTGCTGG 24287
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 24433 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 24492
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || |||
Sbjct 24493 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24552
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 24553 CAACGTCTGATTTTTGCTGG 24572
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 24718 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 24777
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| || |||| ||| |||||||| | || || || ||
Sbjct 24778 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 24837
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 24838 CAACGTTTGATTTTTGCTGGTAA 24860
>seq3254
Length=450
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 411 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 352
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 351 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 292
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | || || |||||
Sbjct 291 CAACGTTTGATTTTTGCTGG 272
>seq67
Length=189510
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| ||
Sbjct 39942 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 39883
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
|| || ||| |||||||||||| || | ||| || || | ||| || |||||
Sbjct 39882 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 39823
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || | || || |||||||| || |||||||
Sbjct 39822 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 39788
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
||||||| | || || | ||||||||||| ||| | ||||||||| ||||| |||
Sbjct 39563 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 39504
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694
| ||||| |||||||| ||||| |||||||||||
Sbjct 39503 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 39469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445721873508720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |