Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22 149 6e-31 seq351 95.1 1e-14 seq286 95.1 1e-14 seq3254 86.0 6e-12 seq67 86.0 6e-12 >seq22 Length=309055 Score = 149 bits (164), Expect = 6e-31 Identities = 260/371 (70%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| || ||||||| |||||| | ||||| || ||||| | | || || || || || Sbjct 282591 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 282532 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| |||||||| || | ||||| || ||| | Sbjct 282531 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 282472 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911 || | ||| ||| || ||||||||||||||||| || || || ||| | Sbjct 282471 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 282417 Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970 || |||||||| ||| | | ||||| | || || | | | || ||| Sbjct 282416 AAGAAAAAGGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 282358 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | |||||||||| || || ||||| || |||||||| |||||||| ||| |||| Sbjct 282357 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 282298 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 282297 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 282238 Query 58091 GCGCGACGAGG 58101 || ||||||| Sbjct 282237 TCGTGACGAGG 282227 >seq351 Length=21764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 21024 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21083 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || ||| Sbjct 21084 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 21143 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 21144 CAACGTCTGATTTTTGCTGG 21163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || |||||||| ||||| | || || ||||| || Sbjct 20175 ATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 20234 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| |||||||| | || || || ||| Sbjct 20235 GATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 20294 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 20295 CAACGTTTGATTTTTGCTGGTAA 20317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 21307 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21366 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || ||| Sbjct 21367 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 21426 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 21427 CAACGTTTGATTTTTGCTGGTAA 21449 >seq286 Length=43880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || |||||||| || Sbjct 24148 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCT 24207 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 24208 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24267 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 24268 CAACGTCTGATTTTTGCTGG 24287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 24433 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 24492 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 24493 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24552 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 24553 CAACGTCTGATTTTTGCTGG 24572 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 24718 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 24777 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || || Sbjct 24778 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 24837 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 24838 CAACGTTTGATTTTTGCTGGTAA 24860 >seq3254 Length=450 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 411 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 352 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || || Sbjct 351 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 292 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | || || ||||| Sbjct 291 CAACGTTTGATTTTTGCTGG 272 >seq67 Length=189510 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| || Sbjct 39942 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 39883 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 39882 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 39823 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | || || |||||||| || ||||||| Sbjct 39822 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 39788 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 39563 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 39504 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 39503 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 39469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445721873508720