Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq67 111 2e-19
seq22 82.4 1e-10
>seq67
Length=189510
Score = 111 bits (122), Expect = 2e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||||| ||||| ||||| | | ||| || || || | | ||||||||| ||
Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 41402
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 41401 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 41342
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250
|| | ||||| ||||| | |||||||||||
Sbjct 41341 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 41308
Score = 105 bits (116), Expect = 8e-18
Identities = 177/251 (71%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650
|||||| |||||||| ||||| || || ||| ||| || || ||||| || ||
Sbjct 40823 ATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTG 40764
Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710
| || | | ||||| ||||| ||| | ||||| ||||||||||| || |||||
Sbjct 40763 TTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 40704
Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767
||| | |||| | | |||| || | ||||| ||||| | | |||||| || ||
Sbjct 40703 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATC 40647
Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827
||| |||||||| ||||||||||| || |||| ||| | || ||||| |||| || |
Sbjct 40646 CGCCAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT- 40588
Query 62828 TGGAATAGGAT 62838
||| |||||
Sbjct 40587 --GAAAAGGAT 40579
Score = 104 bits (114), Expect = 3e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239
|| ||| ||| ||||| || ||||| | || |||||| ||||||||||| || |||
Sbjct 40025 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 39966
Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63298
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 39965 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 39907
Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358
|| ||| | ||||| | || | ||| ||| ||||| |||||||| || ||
Sbjct 39906 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 39847
Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394
|| | | || || | ||||| |||||||| ||
Sbjct 39846 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 39811
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446
|||||| |||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 41099 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 41040
Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 41039 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 40980
Query 62507 ACTATTTCTAAGACCGTA 62524
|||||| ||||| ||
Sbjct 40979 CGAATTTCTCAGACCATA 40962
>seq22
Length=309055
Score = 82.4 bits (90), Expect = 1e-10
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337
||| |||||| ||| |||||||| || || |||||||||||||| || ||||| |||||
Sbjct 281739 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 281798
Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370
|| || || |||||| || || ||||||||
Sbjct 281799 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 281831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629754689094480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |