Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq67 87.8 2e-12
>seq67
Length=189510
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882
|| ||||||| ||| ||||| |||||||| || ||| |||| ||||| ||||||||
Sbjct 41485 TTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATT 41426
Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942
|||| ||| || || | || | |||| | || ||| || || ||| ||
Sbjct 41425 GATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCA 41366
Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002
|| || || || || || || ||||| |||| | |||||||| || || |||||||||
Sbjct 41365 ATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACC 41306
Query 37003 GTTTTATA 37010
|| || ||
Sbjct 41305 GTCTTGTA 41298
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351
||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || ||||
Sbjct 39543 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 39484
Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411
||||| || ||||| || |||| | | ||||||||| || || ||| ||
Sbjct 39483 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 39425
Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || || || || || | ||||| || || ||| ||||||||||||| |||| |||
Sbjct 39424 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 39365
Query 38471 TATATGT 38477
|||| ||
Sbjct 39364 TATAAGT 39358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468478000229040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |