Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq67 120 4e-22
>seq67
Length=189510
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851
||||||| || |||||||| | | ||| | || || | | ||||||||| ||
Sbjct 41521 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 41462
Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911
||||| ||||| |||| ||||| |||||||| || | ||| | ||| | ||
Sbjct 41461 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 41402
Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971
||||||||||||||||||| |||||| ||| || ||||| |||||||| || || |||
Sbjct 41401 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 41342
Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005
|| | ||||| ||||| | |||||||||||
Sbjct 41341 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 41308
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||||||||||||||| || | || | |||||| || | ||| || |||| ||| ||
Sbjct 41099 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 41040
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| |
Sbjct 41039 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 40980
Query 71262 ACTATTTCTAAGACCAT 71278
|||||| |||||||
Sbjct 40979 CGAATTTCTCAGACCAT 40963
Score = 100 bits (110), Expect = 4e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994
|||||| ||| ||||| || ||||| || | |||||||||||||||| || |||
Sbjct 40025 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 39966
Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054
|||| |||||| ||||| || | | | || ||||| || |||||||| ||||| ||
Sbjct 39965 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 39906
Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114
|| ||| | ||||| || || | || ||| ||||| |||||||| || ||
Sbjct 39905 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 39846
Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149
|| | | || || | ||||| |||||||| ||
Sbjct 39845 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 39811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671072161583160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |