Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq542 89.7 5e-13
seq351 89.7 5e-13
seq286 89.7 5e-13
seq1723 84.2 2e-11
seq1209 82.4 8e-11
>seq542
Length=5403
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102
|||||||| | ||||||||||||||||| || || || || ||||| || ||||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162
||||| | || | || || | ||||||||||| | || | ||| |||||||| |
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 143163 ATGTTTTTACGAATATTTGCAT 143184
|| || ||||| ||||||||
Sbjct 240 GAGTCTTAACGAAAATTTGCAT 219
>seq351
Length=21764
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102
|||||||| | ||||||||||||||||| || || || || ||||| || ||||||
Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823
Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162
||||| | || | || || | ||||||||||| | || | ||| |||||||| |
Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763
Query 143163 ATGTTTTTACGAATATTTGCAT 143184
|| || ||||| ||||||||
Sbjct 20762 GAGTCTTAACGAAAATTTGCAT 20741
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
||||||||| | ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
|| | | ||| | ||||| | |||||| ||||| | ||| | || || || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 143162 AATGTTTTTACGAATATTTGCAT 143184
| ||||| || ||||| |||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098
|| ||||||||| | |||| |||||| ||||| ||||| || || ||||| || ||||
Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982
Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158
||| ||| | | ||| | || || | ||||||||||| | ||| | || || ||
Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19922
Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184
|| | || || ||||| ||||||||
Sbjct 19921 GTAAGGGTCTTAACGAAAATTTGCAT 19896
>seq286
Length=43880
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102
|||||||| | ||||||||||||||||| || || || || ||||| || ||||||
Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301
Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162
||||| | || | || || | ||||||||||| | || | ||| |||||||| |
Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241
Query 143163 ATGTTTTTACGAATATTTGCAT 143184
|| || ||||| ||||||||
Sbjct 240 GAGTCTTAACGAAAATTTGCAT 219
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
||||||||| | ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
|| | | ||| | ||||| | |||||| ||||| | ||| | || || || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 143162 AATGTTTTTACGAATATTTGCAT 143184
| ||||| || ||||| |||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCAT 22903
>seq1723
Length=770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098
|| ||||||||| | |||| |||||| ||||| ||||| || || ||||| || ||||
Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589
Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158
||| ||| | | ||| | || || | ||||||||||| | ||| | || || ||
Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 529
Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184
|| | || || ||||| ||||||||
Sbjct 528 GTAAGGGTCTTAACGAAAATTTGCAT 503
>seq1209
Length=1128
Score = 82.4 bits (90), Expect = 8e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102
|||||||| | |||| ||||||||||| || || |||||||| || || ||||||
Sbjct 321 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 262
Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162
||||| | ||| | ||| || | || |||||||| | || | || || || || |
Sbjct 261 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 202
Query 143163 ATGTTTTTACGAATATTTGCATA 143185
||||||| || || || ||||||
Sbjct 201 ATGTTTTCACAAAAATCTGCATA 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506963755599120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |