Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq542 89.7 5e-13 seq351 89.7 5e-13 seq286 89.7 5e-13 seq1723 84.2 2e-11 seq1209 82.4 8e-11 >seq542 Length=5403 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 240 GAGTCTTAACGAAAATTTGCAT 219 >seq351 Length=21764 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 20882 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 20823 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 20822 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 20763 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 20762 GAGTCTTAACGAAAATTTGCAT 20741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | ||||| | |||||| ||||| | ||| | || || || ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 || ||||||||| | |||| |||||| ||||| ||||| || || ||||| || |||| Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 ||| ||| | | ||| | || || | ||||||||||| | ||| | || || || Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19922 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || | || || ||||| |||||||| Sbjct 19921 GTAAGGGTCTTAACGAAAATTTGCAT 19896 >seq286 Length=43880 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | ||||||||||||||||| || || || || ||||| || |||||| Sbjct 360 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 301 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | || || | ||||||||||| | || | ||| |||||||| | Sbjct 300 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTA 241 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 240 GAGTCTTAACGAAAATTTGCAT 219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | ||||| | |||||| ||||| | ||| | || || || ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 22925 AGAGTTTTCACAAATATCTGCAT 22903 >seq1723 Length=770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 || ||||||||| | |||| |||||| ||||| ||||| || || ||||| || |||| Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 ||| ||| | | ||| | || || | ||||||||||| | ||| | || || || Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 529 Query 143159 GTCAATGTTTTTACGAATATTTGCAT 143184 || | || || ||||| |||||||| Sbjct 528 GTAAGGGTCTTAACGAAAATTTGCAT 503 >seq1209 Length=1128 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | |||| ||||||||||| || || |||||||| || || |||||| Sbjct 321 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 262 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | ||| | ||| || | || |||||||| | || | || || || || | Sbjct 261 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 202 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 ||||||| || || || |||||| Sbjct 201 ATGTTTTCACAAAAATCTGCATA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506963755599120