Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq50 91.5 1e-13
seq1209 86.0 4e-12
>seq50
Length=223599
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 1381 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1440
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||||| ||||| || || | || |||||||| || |||||
Sbjct 1441 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 1500
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 1501 GTTTTCACAAAAATCTGCAT 1520
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 810 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 869
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||| | ||||| || || | || |||||||| || |||||
Sbjct 870 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 929
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 930 GTTTTCACAAAAATCTGCAT 949
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 1096 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1155
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||| | ||||| || || | || |||||||| || |||||
Sbjct 1156 TTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 1215
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 1216 GTTTTCACAAAAATCTGCAT 1235
Score = 82.4 bits (90), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 1667 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 1726
Query 44042 TTGACCATAGCAA-CAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAA 44100
|| || | ||| ||||| | ||||| || || | || |||||||| || |||||
Sbjct 1727 TTCACATTTTCAATNNGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 1786
Query 44101 AGTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 1787 TGTTTTCACAAAAATCTGCAT 1807
>seq1209
Length=1128
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 319 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 260
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||| | ||||| || || | || |||||||| || |||||
Sbjct 259 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 200
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 199 GTTTTCACAAAAATCTGCAT 180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354743048098668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |