Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq50 127 5e-24
seq286 120 7e-22
seq351 118 2e-21
seq1723 113 1e-19
seq3254 102 2e-16
seq542 96.9 8e-15
seq1209 95.1 3e-14
seq4 84.2 5e-11
>seq50
Length=223599
Score = 127 bits (140), Expect = 5e-24
Identities = 116/144 (81%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| |||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 2150
Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| |||||||| | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 2151 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 2210
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
|||||| || || |||||||||||
Sbjct 2211 AAGTGTCTTCACGAATATCTGCAT 2234
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || |||||||| || || ||||| ||||| ||||| || |
Sbjct 810 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 869
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || ||||| || | ||| || || || ||||| | |
Sbjct 870 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 929
Query 104540 GTTTTTACAAATATCTGCATT 104560
||||| ||||| |||||||||
Sbjct 930 GTTTTCACAAAAATCTGCATT 950
>seq286
Length=43880
Score = 120 bits (132), Expect = 7e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || ||||| || || || ||||| || || |||||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 23374 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 23315
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 23314 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 23255
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 23254 GTTTTCACAAATATCTGCAT 23235
Score = 113 bits (124), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| || || ||||| |||||||| |||||
Sbjct 25145 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 25086
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 25085 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 25026
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || ||||| || ||||||
Sbjct 25025 GTAAGGGTCTTAACAAAAATTTGCATT 24999
Score = 107 bits (118), Expect = 4e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| || || ||||| |||||||| |||||
Sbjct 24014 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 23955
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 23954 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 23895
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || || ||||||
Sbjct 23894 GTAAGGGTCTTAACGAAAATTTGCATT 23868
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || |||||||| |||||||| || ||
Sbjct 24860 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 24801
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||||||||| |||| ||||| |||||||| |||| || || || || || |||
Sbjct 24800 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 24741
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || ||||| || ||||||
Sbjct 24740 AGAGTCTTAACAAAAATTTGCATT 24717
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||| |||||||| || || ||
Sbjct 24572 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24513
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| || | || || || || || |||||
Sbjct 24512 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24453
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 24452 GTCTTAACAAAAATTTGCATT 24432
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | ||||||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 25418 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 25359
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || || ||||| ||||| || || | || || || || || || ||
Sbjct 25358 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCGGTTAGG 25299
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 25298 GTCTTAACAAAAATTTGCATT 25278
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || ||||| |||||||| ||||| || ||
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || || ||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||| |||||||| || || ||
Sbjct 24287 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 24228
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| ||||| || || | || || || || || |||||
Sbjct 24227 TTTACATTCTCTATTGTATCAGATGGTTCAACTTCCAAGGTGATCGTTTTGCCGGTAAGA 24168
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 24167 GTCTTAACAAAAATTTGCATT 24147
>seq351
Length=21764
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || ||||| || || || ||||| || || |||||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 104537 AGTGTTTTTACAAATATCTGCATTT 104561
|| ||||| ||||||||||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCATTT 18928
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 19401 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 19342
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 19341 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19282
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 19281 GTTTTCACAAATATCTGCAT 19262
Score = 113 bits (124), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| ||||| ||||| |||||||| |||||
Sbjct 20041 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 19982
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 19981 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19922
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || || ||||||
Sbjct 19921 GTAAGGGTCTTAACGAAAATTTGCATT 19895
Score = 113 bits (124), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| ||||| ||||| |||||||| || ||
Sbjct 21734 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGTATT 21675
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 21674 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 21615
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || ||||| || ||||||
Sbjct 21614 GTAAGGGTCTTAACAAAAATTTGCATT 21588
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||| |||||||| || || ||
Sbjct 21163 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21104
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || |||||
Sbjct 21103 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 21044
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 21043 GTCTTAACAAAAATTTGCATT 21023
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | || ||||| || || |||||||| |||||||| || ||
Sbjct 21449 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 21390
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||||||||| |||| ||||| |||||||| |||| || || || || || |||
Sbjct 21389 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 21330
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || ||||| || ||||||
Sbjct 21329 AGAGTCTTAACAAAAATTTGCATT 21306
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || ||||| |||||||| ||||| || ||
Sbjct 20880 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 20821
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || || ||
Sbjct 20820 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 20761
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 20760 GTCTTAACGAAAATTTGCATT 20740
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | || ||||| || || |||||||| |||||||| || ||
Sbjct 20317 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 20258
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| |||||||||| ||||| ||||| || || | ||| || || || || ||
Sbjct 20257 CCTTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCGGTG 20198
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || || || || ||||||
Sbjct 20197 AGAGTCTTAACGAAAATTTGCATT 20174
>seq1723
Length=770
Score = 113 bits (124), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| ||||| ||||| |||||||| |||||
Sbjct 648 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGAGGAATTCCCTCTTTATCTTGAATT 589
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 588 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 529
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || || ||||||
Sbjct 528 GTAAGGGTCTTAACGAAAATTTGCATT 502
>seq3254
Length=450
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | |||||||| || || |||||||| |||||||| || || ||
Sbjct 272 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 331
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || |||||
Sbjct 332 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 391
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 392 GTCTTAACGAAAATTTGCATT 412
>seq542
Length=5403
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || ||||| |||||||| ||||| || ||
Sbjct 358 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 299
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || || ||
Sbjct 298 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTTAGA 239
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 238 GTCTTAACGAAAATTTGCATT 218
>seq1209
Length=1128
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || |||||||| || || ||||| ||||| ||||| || |
Sbjct 319 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 260
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || ||||| || | ||| || || || ||||| | |
Sbjct 259 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 200
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||| ||||||||
Sbjct 199 GTTTTCACAAAAATCTGCAT 180
>seq4
Length=582728
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
||||||||||||| || || || | ||| | || ||||| || ||||||||||||||||
Sbjct 336226 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 336285
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | |||||||||||| || || |||
Sbjct 336286 TCAGTCGCTGTTGATCAGGTGGAATCCCT 336314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151280514434628
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