Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq247 199 6e-47 seq1 150 3e-32 seq58 149 1e-31 seq114 141 1e-29 >seq247 Length=63857 Score = 199 bits (220), Expect = 6e-47 Identities = 208/273 (76%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || || Sbjct 57646 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCTGCGAT 57587 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || |||||| || || ||| | |||||||| | Sbjct 57586 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 57527 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| ||| Sbjct 57526 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 57467 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || ||||| || |||||||| | || ||||| |||||| | ||||| Sbjct 57466 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAAAGACAAGG 57407 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 57406 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 57374 >seq1 Length=851249 Score = 150 bits (166), Expect = 3e-32 Identities = 198/272 (73%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || || || || Sbjct 724326 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 724267 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || || ||| |||||||||| | | Sbjct 724266 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 724207 Query 16553 CGTGATGTTTTGAAGATCTTC-CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||| || | | ||| | | |||||| || ||| || Sbjct 724206 CGAGCTGTGTTGAA-ATCTTTTCTTGAAAATGTTGTTCGAGATGCTGTCACCTACTGTGA 724148 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | || || || ||| | |||||| | ||||||||||||||| | ||||| Sbjct 724147 ACATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGG 724088 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | |||||||||||||| |||||| || Sbjct 724087 TCGAACCATTTATGGTTTTGGTGGTTAATTTT 724056 >seq58 Length=207594 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | | | | || ||||| || |||||||| || || ||||| || Sbjct 165807 GCTAAGCGTCACAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 165866 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||||||| || |||||| | || || || | |||||||||| Sbjct 165867 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 165926 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||| || | | | |||| | | |||||| | ||| ||| Sbjct 165927 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 165986 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||||||||| || | |||||| | || ||||| | |||||||||||| Sbjct 165987 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 166046 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||| || || || Sbjct 166047 CGAACTATTTACGGCTTCGG 166066 >seq114 Length=139190 Score = 141 bits (156), Expect = 1e-29 Identities = 196/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||| || |||||||| || || || || Sbjct 39546 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 39487 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 39486 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 39427 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| ||| ||| | | |||||| || ||| ||| Sbjct 39426 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 39367 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| ||||| | |||||| | || ||||| |||||| | ||||| Sbjct 39366 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 39307 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704 || | || ||||||||||| ||||| ||||| Sbjct 39306 CGAACCATCTATGGTTTTGGTGGTTAACTCTTC 39274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067893772763