Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq152 132 1e-25
seq67 84.2 6e-11
>seq152
Length=111689
Score = 132 bits (146), Expect = 1e-25
Identities = 163/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373
||||||||| || |||||||| || | ||||| ||| | ||||||||||| || ||
Sbjct 74710 TTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTCGAAGAACTGCTTTG 74651
Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433
||| || | ||||| || ||||| || | ||| ||| || ||||| || ||||||||
Sbjct 74650 GTTCATCAGTGGAAGCACCAATGCTAAACAGCTTTCAGAGAAGAATGTTAACATTTGGGA 74591
Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTTGTCGACAACGAAGAAGGT 111491
||||||| || | || || ||||| |||| || || | | | |||||||||
Sbjct 74590 TGGAAATTCTTCCAGAGAATTCCTAGA--CAGTAGAGGACTGTACAATTATGAAGAAGGT 74533
Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532
||| | || || ||||| || || |||||||||||||||||
Sbjct 74532 GATTTGGGGCCTGTTTATGGTTTCCAATGGCGCCACTTTGG 74492
>seq67
Length=189510
Score = 84.2 bits (92), Expect = 6e-11
Identities = 164/240 (68%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897
||||||||||| | ||| | || ||| || || || || ||||| |||||||| | |
Sbjct 39796 GGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 39854
Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956
||| ||||| || || ||| || || || ||| |||| ||||| || ||| |
Sbjct 39855 GAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGAT 39914
Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016
|||| | || ||||||||| | || || | |||||||||| | ||||| ||
Sbjct 39915 ACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCA 39974
Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076
|||||||| || | | ||| | ||||| || || | || |||||||||||||
Sbjct 39975 TGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 40034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303220156548962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |