Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq897 127 1e-24
seq6146 122 6e-23
seq965 122 6e-23
seq853 122 6e-23
seq477 122 6e-23
seq340 122 6e-23
seq357 111 1e-19
seq389 105 4e-18
seq435 98.7 7e-16
seq351 91.5 1e-13
seq286 91.5 1e-13
seq50 82.4 5e-11
>seq897
Length=1851
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 156 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 97
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 96 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 62
>seq6146
Length=273
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154
>seq965
Length=813
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154
>seq853
Length=2109
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 2050 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1991
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 1990 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1956
>seq477
Length=7352
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1520 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1579
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 1580 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1614
>seq340
Length=26095
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 24729 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 24670
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 24669 TGATCCATTCATACGCGTCACTAATTAGATGACGA 24635
>seq357
Length=20832
Score = 111 bits (122), Expect = 1e-19
Identities = 81/94 (86%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| ||||||| ||||||||||| | ||||| ||
Sbjct 12273 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGACAGTAGATAGGGACAGAAGGAATCTTGT 12332
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 12333 TGATCCATTCATACGCGTCACTAATTAGATGACG 12366
>seq389
Length=15266
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 5231 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 5172
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 5171 ACGAATATTTAGTCTT 5156
>seq435
Length=9341
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 241 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 300
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 301 GCCGGTATTTAGCCTTA 317
>seq351
Length=21764
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 19260 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 19201
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 19200 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 19166
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | || | |||||||||||| ||| ||
Sbjct 19401 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 19342
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 19341 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19282
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 19281 GTTTTCACAAATATCTGCAT 19262
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| ||||| || |||||||||||
Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930
>seq286
Length=43880
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 23233 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 23174
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 23173 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 23139
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | |||| |||||||||||| ||| ||
Sbjct 23374 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 23315
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 23314 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 23255
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 23254 GTTTTCACAAATATCTGCAT 23235
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
| |||||||| ||||||||||| ||
Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900
>seq50
Length=223599
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| |||| | ||| ||||| | || | |||||| || ||| ||||||
Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
|| ||||| | || || ||| ||||||||||| ||| |||||||| || ||
Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| || |||||||||||||||||
Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334914579387521
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |