Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq897 127 1e-24 seq6146 122 6e-23 seq965 122 6e-23 seq853 122 6e-23 seq477 122 6e-23 seq340 122 6e-23 seq357 111 1e-19 seq389 105 4e-18 seq435 98.7 7e-16 seq351 91.5 1e-13 seq286 91.5 1e-13 seq50 82.4 5e-11 >seq897 Length=1851 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 156 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 97 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 96 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 62 >seq6146 Length=273 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq965 Length=813 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq853 Length=2109 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 2050 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1991 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 1990 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1956 >seq477 Length=7352 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 1520 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1579 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 1580 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1614 >seq340 Length=26095 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 24729 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 24670 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 24669 TGATCCATTCATACGCGTCACTAATTAGATGACGA 24635 >seq357 Length=20832 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||| ||||||||||| | ||||| || Sbjct 12273 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGACAGTAGATAGGGACAGAAGGAATCTTGT 12332 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 12333 TGATCCATTCATACGCGTCACTAATTAGATGACG 12366 >seq389 Length=15266 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 5231 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 5172 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||| ||| Sbjct 5171 ACGAATATTTAGTCTT 5156 >seq435 Length=9341 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 241 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 300 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 301 GCCGGTATTTAGCCTTA 317 >seq351 Length=21764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| ||| Sbjct 19260 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 19201 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| |||| |||| || || ||||| || | ||| Sbjct 19200 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 19166 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | || | |||||||||||| ||| || Sbjct 19401 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 19342 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 19341 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 19282 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 19281 GTTTTCACAAATATCTGCAT 19262 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 19072 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 19013 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || ||| ||| ||||| | ||||| ||||| || ||| Sbjct 19012 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18953 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||||||||| Sbjct 18952 AGAGTTTTGACAAATATCTGCAT 18930 >seq286 Length=43880 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| ||| Sbjct 23233 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 23174 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| |||| |||| || || ||||| || | ||| Sbjct 23173 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 23139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | |||| |||||||||||| ||| || Sbjct 23374 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 23315 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 23314 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 23255 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 23254 GTTTTCACAAATATCTGCAT 23235 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 23045 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22986 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || ||| ||| ||||| | ||||| ||||| || ||| Sbjct 22985 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 22926 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||| ||||||||||| || Sbjct 22925 AGAGTTTTCACAAATATCTGCATTTT 22900 >seq50 Length=223599 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| |||| | ||| ||||| | || | |||||| || ||| |||||| Sbjct 2092 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 2151 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || || ||| ||||||||||| ||| |||||||| || || Sbjct 2152 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 2211 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || ||||||||||||||||| Sbjct 2212 AGTGTCTTCACGAATATCTGCAT 2234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334914579387521