Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq22 205 1e-47 >seq22 Length=309055 Score = 205 bits (226), Expect = 1e-47 Identities = 267/365 (73%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || || |||| ||| |||||||| || ||||| || | ||| || || || || Sbjct 282229 TCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTC 282288 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || ||||| || || || || ||||| || || ||||| || ||||| || || Sbjct 282289 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCG 282348 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCG 93292 || | ||||||| |||||| ||| | | || | | |||||| |||||||| || Sbjct 282349 ACCAAACGTTCG-CAAAATG-GCG-ACTGACGGTCACCGATCCAGCGCAAAGCCCAGTCT 282405 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352 || |||||||| | || || | || ||||| ||||| || || |||| ||||| || Sbjct 282406 GCCTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCACGCTCCACC 282465 Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 | ||| || ||||| || ||||| || || |||||||| ||||||||||| || || Sbjct 282466 GGATCACGGATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATG 282525 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||| | | || || || | || | |||||| ||||||| | Sbjct 282526 GCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATCGC 282585 Query 93473 TCTAC 93477 || || Sbjct 282586 TCCAC 282590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556805176566840