Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24]
7,991 sequences; 51,504,795 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq542 113 4e-20
seq351 113 4e-20
seq286 113 4e-20
seq1723 105 6e-18
seq3254 100 2e-16
seq1209 95.1 1e-14
seq50 95.1 1e-14
seq67 84.2 2e-11
>seq542
Length=5403
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| ||||||| |||||| |||| | ||||| ||| | |
Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || ||||| |||||||| |||||
Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||||| || ||||| ||
Sbjct 339 CAACGTCTGATTTTTGCTGG 358
>seq351
Length=21764
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| ||||||| |||||| |||| | ||||| ||| | |
Sbjct 20741 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 20800
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || ||||| |||||||| |||||
Sbjct 20801 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 20860
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||||| || ||||| ||
Sbjct 20861 CAACGTCTGATTTTTGCTGG 20880
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || |
Sbjct 18930 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 18989
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | || |||||||| || || ||||| |||||||||||||||
Sbjct 18990 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19049
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|||||||| || ||||| || ||
Sbjct 19050 CAACGTCTGATTTTTGCTGGTAA 19072
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | || || ||||| | ||| | ||||| ||| | |
Sbjct 20459 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20518
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||||
Sbjct 20519 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 20578
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|| ||| | |||||||| || ||
Sbjct 20579 CAGCGTTTGATATTTGCTGGTAA 20601
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 21024 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21083
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| |||||
Sbjct 21084 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 21143
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||||| || ||||| ||
Sbjct 21144 CAACGTCTGATTTTTGCTGG 21163
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | |
Sbjct 19896 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19955
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||||||| || ||||| ||||| || ||||||
Sbjct 19956 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 20015
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367
|||||| | || ||||| || || |||||
Sbjct 20016 CAACGTTTGATTTTTGCTGGTAAGCAGTT 20044
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| || | || || ||||| | ||| | ||||| ||| | |
Sbjct 21589 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 21648
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||| ||||| || ||||| ||||| || ||||||
Sbjct 21649 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 21708
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367
|||||| | || ||||| || || |||||
Sbjct 21709 CAACGTTTGATTTTTGCTGGTAAGCAGTT 21737
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 21307 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21366
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| |||||
Sbjct 21367 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 21426
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|||||| | || ||||| || ||
Sbjct 21427 CAACGTTTGATTTTTGCTGGTAA 21449
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || ||||| ||||| || || || |||||| | || |||||||| || | |
Sbjct 19261 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 19320
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||||| | || || | ||| || ||||||||||| || || |||||||| |||||
Sbjct 19321 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCA 19380
Query 22338 ACAACGTCTTATATTTGCCGG 22358
||| || ||||| ||||| ||
Sbjct 19381 ACAGCGGCTTATTTTTGCTGG 19401
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| | ||||| ||||| |||| | ||||||||| | |
Sbjct 20175 ATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 20234
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| |||||
Sbjct 20235 GATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 20294
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|||||| | || ||||| || ||
Sbjct 20295 CAACGTTTGATTTTTGCTGGTAA 20317
>seq286
Length=43880
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| ||||||| |||||| |||| | ||||| ||| | |
Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || ||||| |||||||| |||||
Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||||| || ||||| ||
Sbjct 339 CAACGTCTGATTTTTGCTGG 358
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| || ||||||| ||||| |||| | ||||||||| | |
Sbjct 25279 ATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATCT 25338
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| || || || | ||| || |||||||| |||||||| ||||| || ||||||
Sbjct 25339 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 25398
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| ||||| || ||||| ||
Sbjct 25399 CAGCGTCTGATTTTTGCTGG 25418
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| || | || || ||||| | ||| | ||||| ||| | |
Sbjct 25000 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 25059
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||||||| || ||||| |||||||| ||||||
Sbjct 25060 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 25119
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367
|||||| | || ||||| || || |||||
Sbjct 25120 CAACGTTTGATTTTTGCTGGTAAGCAGTT 25148
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | |
Sbjct 23869 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 23928
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||||||| || ||||| |||||||| ||||||
Sbjct 23929 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 23988
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367
|||||| | || ||||| || || |||||
Sbjct 23989 CAACGTTTGATTTTTGCTGGTAAGCAGTT 24017
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| ||
Sbjct 22900 AAAATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCC 22959
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | || || | || |||||||| || || ||||| ||||||||||||
Sbjct 22960 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 23019
Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361
||||||||||| || ||||| || ||
Sbjct 23020 CAACAACGTCTGATTTTTGCTGGTAA 23045
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 24718 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 24777
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| ||||||
Sbjct 24778 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 24837
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|||||| | || ||||| || ||
Sbjct 24838 CAACGTTTGATTTTTGCTGGTAA 24860
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 24148 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCT 24207
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| |||||
Sbjct 24208 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24267
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||||| || ||||| ||
Sbjct 24268 CAACGTCTGATTTTTGCTGG 24287
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 24433 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 24492
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| |||||
Sbjct 24493 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24552
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||||| || ||||| ||
Sbjct 24553 CAACGTCTGATTTTTGCTGG 24572
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| || ||||| ||||| || || || |||||| | || |||||||| || | |
Sbjct 23234 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 23293
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||||| | || || | ||| || ||||||||||| || || || ||||| |||||
Sbjct 23294 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 23353
Query 22338 ACAACGTCTTATATTTGCCGG 22358
||| || ||||| ||||| ||
Sbjct 23354 ACAGCGGCTTATTTTTGCTGG 23374
>seq1723
Length=770
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| ||| | || || ||||| | ||| | ||||| ||| | |
Sbjct 221 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 280
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||||
Sbjct 281 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 340
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|| ||| | |||||||| || ||
Sbjct 341 CAGCGTTTGATATTTGCTGGTAA 363
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | |
Sbjct 503 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 562
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||||||| || ||||| ||||| || ||||||
Sbjct 563 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 622
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367
|||||| | || ||||| || || |||||
Sbjct 623 CAACGTTTGATTTTTGCTGGTAAGCAGTT 651
>seq3254
Length=450
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 411 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 352
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| ||||||
Sbjct 351 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 292
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||| | || ||||| ||
Sbjct 291 CAACGTTTGATTTTTGCTGG 272
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | |
Sbjct 128 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 69
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || ||||| || |||||||| ||||||
Sbjct 68 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 9
Query 22339 CAACGT 22344
||||||
Sbjct 8 CAACGT 3
>seq1209
Length=1128
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 180 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 239
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 240 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 299
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||| | |||||||| ||
Sbjct 300 CAACGATTGATATTTGCTGG 319
>seq50
Length=223599
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 949 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 890
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 889 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 830
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||| | |||||||| ||
Sbjct 829 CAACGATTGATATTTGCTGG 810
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 1235 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1176
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 1175 GATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1116
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||| | |||||||| ||
Sbjct 1115 CAACGATTGATATTTGCTGG 1096
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 1520 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 1461
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401
Query 22339 CAACGTCTTATATTTGCCGG 22358
||||| | |||||||| ||
Sbjct 1400 CAACGATTGATATTTGCTGG 1381
Score = 91.5 bits (100), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 1807 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1748
Query 22279 GATACCG-TGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||||| | || || | ||| ||||||||||| ||||| || |||||||| |||||
Sbjct 1747 GATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1688
Query 22338 ACAACGTCTTATATTTGCCGG 22358
||||| | |||||||| ||
Sbjct 1687 GCAACGATTGATATTTGCTGG 1667
>seq67
Length=189510
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 129977 ATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAAT 130036
||||| | || ||||||| ||| ||| || ||||| | || ||||| || | ||
Sbjct 39979 ATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGAT 39920
Query 130037 CGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTAC 130096
| |||| ||| ||||| || ||||||||||| ||| | || ||| | || ||||
Sbjct 39919 CAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCT 39860
Query 130097 GTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATA 130145
|||| ||||| ||||| | ||||| |||||||| ||||| | |||
Sbjct 39859 TTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 39811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419687122558915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |