Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20britovi_20[genbank_20GCA_5F001447585.1_202015-11-24] 7,991 sequences; 51,504,795 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq542 113 4e-20 seq351 113 4e-20 seq286 113 4e-20 seq1723 105 6e-18 seq3254 100 2e-16 seq1209 95.1 1e-14 seq50 95.1 1e-14 seq67 84.2 2e-11 >seq542 Length=5403 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| ||||||| |||||| |||| | ||||| ||| | | Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 339 CAACGTCTGATTTTTGCTGG 358 >seq351 Length=21764 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| ||||||| |||||| |||| | ||||| ||| | | Sbjct 20741 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 20800 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 20801 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 20860 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 20861 CAACGTCTGATTTTTGCTGG 20880 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || | Sbjct 18930 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 18989 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| || || ||||| ||||||||||||||| Sbjct 18990 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 19049 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||||| || ||||| || || Sbjct 19050 CAACGTCTGATTTTTGCTGGTAA 19072 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | ||| | ||||| ||| | | Sbjct 20459 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20518 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| |||||| Sbjct 20519 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 20578 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | |||||||| || || Sbjct 20579 CAGCGTTTGATATTTGCTGGTAA 20601 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 21024 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21083 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 21084 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 21143 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 21144 CAACGTCTGATTTTTGCTGG 21163 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 19896 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19955 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| ||||| || |||||| Sbjct 19956 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 20015 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 20016 CAACGTTTGATTTTTGCTGGTAAGCAGTT 20044 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 21589 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 21648 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||| ||||| || ||||| ||||| || |||||| Sbjct 21649 GATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCAA 21708 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 21709 CAACGTTTGATTTTTGCTGGTAAGCAGTT 21737 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 21307 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 21366 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 21367 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 21426 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 21427 CAACGTTTGATTTTTGCTGGTAA 21449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| || || || |||||| | || |||||||| || | | Sbjct 19261 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 19320 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| || ||||||||||| || || |||||||| ||||| Sbjct 19321 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCA 19380 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||| || ||||| ||||| || Sbjct 19381 ACAGCGGCTTATTTTTGCTGG 19401 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| ||||| |||| | ||||||||| | | Sbjct 20175 ATGCAAATTTTCGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 20234 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 20235 GATACAATAGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 20294 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 20295 CAACGTTTGATTTTTGCTGGTAA 20317 >seq286 Length=43880 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| ||||||| |||||| |||| | ||||| ||| | | Sbjct 219 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 278 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 279 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 338 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 339 CAACGTCTGATTTTTGCTGG 358 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || ||||||| ||||| |||| | ||||||||| | | Sbjct 25279 ATGCAAATTTTTGTTAAGACCCTAACCGGGAAAACCATCACGTTGGAAGTGGAACCATCT 25338 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || || | ||| || |||||||| |||||||| ||||| || |||||| Sbjct 25339 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 25398 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || ||||| || Sbjct 25399 CAGCGTCTGATTTTTGCTGG 25418 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 25000 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 25059 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 25060 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 25119 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 25120 CAACGTTTGATTTTTGCTGGTAAGCAGTT 25148 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 23869 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 23928 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 23929 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 23988 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 23989 CAACGTTTGATTTTTGCTGGTAAGCAGTT 24017 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || Sbjct 22900 AAAATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCC 22959 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || |||||||| || || ||||| |||||||||||| Sbjct 22960 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 23019 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| || ||||| || || Sbjct 23020 CAACAACGTCTGATTTTTGCTGGTAA 23045 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 24718 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 24777 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 24778 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 24837 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 24838 CAACGTTTGATTTTTGCTGGTAA 24860 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 24148 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTTGAACCATCT 24207 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 24208 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24267 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 24268 CAACGTCTGATTTTTGCTGG 24287 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 24433 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 24492 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 24493 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 24552 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 24553 CAACGTCTGATTTTTGCTGG 24572 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| || || || |||||| | || |||||||| || | | Sbjct 23234 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 23293 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| || ||||||||||| || || || ||||| ||||| Sbjct 23294 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 23353 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||| || ||||| ||||| || Sbjct 23354 ACAGCGGCTTATTTTTGCTGG 23374 >seq1723 Length=770 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | ||| | ||||| ||| | | Sbjct 221 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 280 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| |||||| Sbjct 281 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 340 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | |||||||| || || Sbjct 341 CAGCGTTTGATATTTGCTGGTAA 363 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 503 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 562 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| ||||| || |||||| Sbjct 563 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCTCCGGATCAA 622 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 623 CAACGTTTGATTTTTGCTGGTAAGCAGTT 651 >seq3254 Length=450 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 411 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 352 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 351 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 292 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || ||||| || Sbjct 291 CAACGTTTGATTTTTGCTGG 272 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 128 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 69 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 68 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 9 Query 22339 CAACGT 22344 |||||| Sbjct 8 CAACGT 3 >seq1209 Length=1128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 180 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 239 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 240 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 299 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 300 CAACGATTGATATTTGCTGG 319 >seq50 Length=223599 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 949 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 890 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 889 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 830 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 829 CAACGATTGATATTTGCTGG 810 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 1235 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1176 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 1175 GATACAATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1116 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 1115 CAACGATTGATATTTGCTGG 1096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 1520 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 1461 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 1460 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 1401 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 1400 CAACGATTGATATTTGCTGG 1381 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 1807 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 1748 Query 22279 GATACCG-TGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 1747 GATACNNATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 1688 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 1687 GCAACGATTGATATTTGCTGG 1667 >seq67 Length=189510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 129977 ATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAAT 130036 ||||| | || ||||||| ||| ||| || ||||| | || ||||| || | || Sbjct 39979 ATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGAT 39920 Query 130037 CGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTAC 130096 | |||| ||| ||||| || ||||||||||| ||| | || ||| | || |||| Sbjct 39919 CAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCT 39860 Query 130097 GTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATA 130145 |||| ||||| ||||| | ||||| |||||||| ||||| | ||| Sbjct 39859 TTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 39811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419687122558915